miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 124917 1.13 0.001274
Target:  5'- cGGCUCCUUCCGCUUCACGUCGCGGGCc -3'
miRNA:   3'- -CCGAGGAAGGCGAAGUGCAGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 132538 0.77 0.294271
Target:  5'- cGCUCCacggCCGC--CACGUaCGCGGGCa -3'
miRNA:   3'- cCGAGGaa--GGCGaaGUGCA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 92824 0.75 0.400271
Target:  5'- uGGCUCgCUgCUGCggCACGUgaagaacgagaCGCGGGCg -3'
miRNA:   3'- -CCGAG-GAaGGCGaaGUGCA-----------GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 4787 0.74 0.408719
Target:  5'- gGGC-CCggCCGCggCGCGguaGCGGGCc -3'
miRNA:   3'- -CCGaGGaaGGCGaaGUGCag-CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 66751 0.74 0.425947
Target:  5'- cGCUCCUUCCGCg--ACGcCGCGacGGCc -3'
miRNA:   3'- cCGAGGAAGGCGaagUGCaGCGC--CCG- -5'
29389 3' -57.4 NC_006151.1 + 618 0.74 0.443598
Target:  5'- cGGCcCCUUCCGCUUCccccggACGUgaCGCcGGCu -3'
miRNA:   3'- -CCGaGGAAGGCGAAG------UGCA--GCGcCCG- -5'
29389 3' -57.4 NC_006151.1 + 113533 0.74 0.443598
Target:  5'- cGCuUCCUggCGCUgaugCGCGcCGCGGGCc -3'
miRNA:   3'- cCG-AGGAagGCGAa---GUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 22299 0.74 0.452577
Target:  5'- cGGCgUCCacgUCCGCgccgaGCGUCGUccGGGCg -3'
miRNA:   3'- -CCG-AGGa--AGGCGaag--UGCAGCG--CCCG- -5'
29389 3' -57.4 NC_006151.1 + 69435 0.73 0.489441
Target:  5'- cGGCgccgCCgccgUUCGCguccucgCGCGcCGCGGGCg -3'
miRNA:   3'- -CCGa---GGa---AGGCGaa-----GUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 101543 0.73 0.493205
Target:  5'- uGGCgcgCCUgcgCCcgGCggacguguacgcgCACGUCGCGGGCu -3'
miRNA:   3'- -CCGa--GGAa--GG--CGaa-----------GUGCAGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 136684 0.73 0.498877
Target:  5'- cGcCUUCUUCCGC--CACGU-GCGGGCg -3'
miRNA:   3'- cC-GAGGAAGGCGaaGUGCAgCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 34456 0.72 0.508393
Target:  5'- cGGCUCCUUCC-UUcCGgGUC-CGGGCg -3'
miRNA:   3'- -CCGAGGAAGGcGAaGUgCAGcGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 82663 0.72 0.508393
Target:  5'- cGGC-CCaccCUGCggCGCGcCGCGGGCg -3'
miRNA:   3'- -CCGaGGaa-GGCGaaGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 130103 0.72 0.508393
Target:  5'- cGCUCCUcggCCGUgaagcccgggUUCugGcCGUGGGCg -3'
miRNA:   3'- cCGAGGAa--GGCG----------AAGugCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 7975 0.72 0.517023
Target:  5'- cGGCucgugugUCCUUCCGCggUACcUCggGCGGGCg -3'
miRNA:   3'- -CCG-------AGGAAGGCGaaGUGcAG--CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 127992 0.72 0.547169
Target:  5'- cGGCggC-UCCGCgUCGCgGUCGCGGGg -3'
miRNA:   3'- -CCGagGaAGGCGaAGUG-CAGCGCCCg -5'
29389 3' -57.4 NC_006151.1 + 129059 0.72 0.547169
Target:  5'- cGGCUCCgccgagcacgCCGUgaUCACGgacUCGgGGGCg -3'
miRNA:   3'- -CCGAGGaa--------GGCGa-AGUGC---AGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 123251 0.72 0.557015
Target:  5'- cGUUCUgcgaggCCGCcgCGCG-CGCGGGCa -3'
miRNA:   3'- cCGAGGaa----GGCGaaGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 705 0.71 0.586832
Target:  5'- uGCcCCUUCCGUcgCACcggggGUcCGCGGGCg -3'
miRNA:   3'- cCGaGGAAGGCGaaGUG-----CA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 131415 0.71 0.596843
Target:  5'- gGGCUCCUccUCCucGCUgcUCuccuCGUCgggcgGCGGGCg -3'
miRNA:   3'- -CCGAGGA--AGG--CGA--AGu---GCAG-----CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.