miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 555 0.7 0.637068
Target:  5'- cGGCcCCUUCCGCUUCccccggACGUgaCGCcGGUc -3'
miRNA:   3'- -CCGaGGAAGGCGAAG------UGCA--GCGcCCG- -5'
29389 3' -57.4 NC_006151.1 + 618 0.74 0.443598
Target:  5'- cGGCcCCUUCCGCUUCccccggACGUgaCGCcGGCu -3'
miRNA:   3'- -CCGaGGAAGGCGAAG------UGCA--GCGcCCG- -5'
29389 3' -57.4 NC_006151.1 + 705 0.71 0.586832
Target:  5'- uGCcCCUUCCGUcgCACcggggGUcCGCGGGCg -3'
miRNA:   3'- cCGaGGAAGGCGaaGUG-----CA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 3591 0.66 0.842891
Target:  5'- gGGCcCCcggUCCuCUUCGuCGUCGCGguGGCc -3'
miRNA:   3'- -CCGaGGa--AGGcGAAGU-GCAGCGC--CCG- -5'
29389 3' -57.4 NC_006151.1 + 3983 0.68 0.736221
Target:  5'- cGGCgagCCggCCGCggcCACGUUGgccgGGGCg -3'
miRNA:   3'- -CCGa--GGaaGGCGaa-GUGCAGCg---CCCG- -5'
29389 3' -57.4 NC_006151.1 + 4027 0.67 0.79206
Target:  5'- cGGCguaggUCCaggCgGCcUCGCGggCGCGGGCc -3'
miRNA:   3'- -CCG-----AGGaa-GgCGaAGUGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 4138 0.68 0.755278
Target:  5'- cGGCcgggCCggCCccggGgaUCGCGUCGCGGaGCg -3'
miRNA:   3'- -CCGa---GGaaGG----CgaAGUGCAGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 4787 0.74 0.408719
Target:  5'- gGGC-CCggCCGCggCGCGguaGCGGGCc -3'
miRNA:   3'- -CCGaGGaaGGCGaaGUGCag-CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 5409 0.67 0.83484
Target:  5'- cGGCgaggCCgagUCCGUccucguccUUCuCGgggcCGCGGGCg -3'
miRNA:   3'- -CCGa---GGa--AGGCG--------AAGuGCa---GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 7975 0.72 0.517023
Target:  5'- cGGCucgugugUCCUUCCGCggUACcUCggGCGGGCg -3'
miRNA:   3'- -CCG-------AGGAAGGCGaaGUGcAG--CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 10183 0.7 0.647134
Target:  5'- -uCUCUgcgUUCGCcggUCGCGgCGCGGGCg -3'
miRNA:   3'- ccGAGGa--AGGCGa--AGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 10497 0.69 0.716815
Target:  5'- cGGCgcgcgCCcgCCGCcgcaggCGCGUCcccggcGCGGGCg -3'
miRNA:   3'- -CCGa----GGaaGGCGaa----GUGCAG------CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 11011 0.66 0.85843
Target:  5'- cGGCUcgcCCgcCCGC-UCGC-UCGCcGGGCc -3'
miRNA:   3'- -CCGA---GGaaGGCGaAGUGcAGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 11306 0.66 0.88024
Target:  5'- cGCUCUcccgggCCGC--CGCGauaccgCGCGGGCg -3'
miRNA:   3'- cCGAGGaa----GGCGaaGUGCa-----GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 11853 0.69 0.6872
Target:  5'- -cCUCCUUCCuCUccccgucgacUCGCGUCGCGG-Cg -3'
miRNA:   3'- ccGAGGAAGGcGA----------AGUGCAGCGCCcG- -5'
29389 3' -57.4 NC_006151.1 + 14651 0.66 0.849979
Target:  5'- gGGCUCgggUCCGgUUCcgggucgGCGUCGgGGaGCc -3'
miRNA:   3'- -CCGAGga-AGGCgAAG-------UGCAGCgCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 18665 0.68 0.764653
Target:  5'- gGGCgucgUCCggCCGUacgggUUcCACGggcgCGCGGGCg -3'
miRNA:   3'- -CCG----AGGaaGGCG-----AA-GUGCa---GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 19632 0.68 0.736221
Target:  5'- cGGCgCCgucgCCGCg-CGCGUCGaGGGUg -3'
miRNA:   3'- -CCGaGGaa--GGCGaaGUGCAGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 20753 0.66 0.873178
Target:  5'- cGGCgcgCCUccaCCGCggcggaCGCG-CGCcGGGCg -3'
miRNA:   3'- -CCGa--GGAa--GGCGaa----GUGCaGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 21359 0.66 0.873178
Target:  5'- cGGCUCCgcgggCUGCggcCACc-CGCuGGGCa -3'
miRNA:   3'- -CCGAGGaa---GGCGaa-GUGcaGCG-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.