miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 139911 0.7 0.667222
Target:  5'- cGGCuUCCgcgCCGCgggCuCGUCGCcguGGGCc -3'
miRNA:   3'- -CCG-AGGaa-GGCGaa-GuGCAGCG---CCCG- -5'
29389 3' -57.4 NC_006151.1 + 139810 0.7 0.677229
Target:  5'- cGCgccgCCgucUCCGCgacgCACG-CGCGGGUc -3'
miRNA:   3'- cCGa---GGa--AGGCGaa--GUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 136811 0.66 0.85843
Target:  5'- cGCUCgCggCCGa--CGCGccgCGCGGGCu -3'
miRNA:   3'- cCGAG-GaaGGCgaaGUGCa--GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 136684 0.73 0.498877
Target:  5'- cGcCUUCUUCCGC--CACGU-GCGGGCg -3'
miRNA:   3'- cC-GAGGAAGGCGaaGUGCAgCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 136097 0.68 0.745798
Target:  5'- cGCUCCa-UCGCggUCggGCGcCGCGGGCu -3'
miRNA:   3'- cCGAGGaaGGCGa-AG--UGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 134561 0.66 0.85843
Target:  5'- cGGC-CCgugCCGCUUC-CGgauccagaacCGCGGcGCg -3'
miRNA:   3'- -CCGaGGaa-GGCGAAGuGCa---------GCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 132538 0.77 0.294271
Target:  5'- cGCUCCacggCCGC--CACGUaCGCGGGCa -3'
miRNA:   3'- cCGAGGaa--GGCGaaGUGCA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 131864 0.66 0.88024
Target:  5'- cGCgcgCCggCgGCgUCGgGUCGCaGGGCa -3'
miRNA:   3'- cCGa--GGaaGgCGaAGUgCAGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 131415 0.71 0.596843
Target:  5'- gGGCUCCUccUCCucGCUgcUCuccuCGUCgggcgGCGGGCg -3'
miRNA:   3'- -CCGAGGA--AGG--CGA--AGu---GCAG-----CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 131213 0.66 0.842891
Target:  5'- -cCUCCUcuUCCGCgucccaCGCGUCGCcgucGGCc -3'
miRNA:   3'- ccGAGGA--AGGCGaa----GUGCAGCGc---CCG- -5'
29389 3' -57.4 NC_006151.1 + 131112 0.67 0.800927
Target:  5'- gGGC-CCggCCGCggCGCGggaggcCGCGGcGCc -3'
miRNA:   3'- -CCGaGGaaGGCGaaGUGCa-----GCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 130499 0.69 0.6872
Target:  5'- cGGCgCCacacgCCGCgcgUCuCGggCGCGGGCg -3'
miRNA:   3'- -CCGaGGaa---GGCGa--AGuGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 130103 0.72 0.508393
Target:  5'- cGCUCCUcggCCGUgaagcccgggUUCugGcCGUGGGCg -3'
miRNA:   3'- cCGAGGAa--GGCG----------AAGugCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 129268 0.69 0.696137
Target:  5'- aGGCaUCCUUCCacgaagcGCggCGCGUUccuCGGGCg -3'
miRNA:   3'- -CCG-AGGAAGG-------CGaaGUGCAGc--GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 129059 0.72 0.547169
Target:  5'- cGGCUCCgccgagcacgCCGUgaUCACGgacUCGgGGGCg -3'
miRNA:   3'- -CCGAGGaa--------GGCGa-AGUGC---AGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 127992 0.72 0.547169
Target:  5'- cGGCggC-UCCGCgUCGCgGUCGCGGGg -3'
miRNA:   3'- -CCGagGaAGGCGaAGUG-CAGCGCCCg -5'
29389 3' -57.4 NC_006151.1 + 127812 0.66 0.865906
Target:  5'- gGGCgcgaggUCCUUgCGgUUCACGUaCGUGGcgGCg -3'
miRNA:   3'- -CCG------AGGAAgGCgAAGUGCA-GCGCC--CG- -5'
29389 3' -57.4 NC_006151.1 + 127722 0.66 0.85843
Target:  5'- aGGCcCCgg-CGUccC-CGUCGCGGGCg -3'
miRNA:   3'- -CCGaGGaagGCGaaGuGCAGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 127310 0.67 0.809647
Target:  5'- aGGCcgUCgUCCGCg-CGgGUcCGCGGGCg -3'
miRNA:   3'- -CCGa-GGaAGGCGaaGUgCA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 126390 0.68 0.755278
Target:  5'- gGGC-CCgcgCUGCUggccagcCGCGUCG-GGGCg -3'
miRNA:   3'- -CCGaGGaa-GGCGAa------GUGCAGCgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.