miRNA display CGI


Results 41 - 60 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 78042 0.67 0.825338
Target:  5'- ---cCGGCGACGcgGCGCAuCUGGGCg -3'
miRNA:   3'- agcaGUCGCUGCagUGCGUcGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 133214 0.67 0.825338
Target:  5'- cUUGUUgaaGGCGuGCGUCGCGCcGCgccaGGGCa -3'
miRNA:   3'- -AGCAG---UCGC-UGCAGUGCGuCGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 114413 0.67 0.825338
Target:  5'- -aGUCGGUGcACGUgCAccacCGCGuGCUGGACc -3'
miRNA:   3'- agCAGUCGC-UGCA-GU----GCGU-CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 88768 0.67 0.825338
Target:  5'- aCGUUGGCGACgGUCGCGC-GCUcgcccucGACg -3'
miRNA:   3'- aGCAGUCGCUG-CAGUGCGuCGAc------CUG- -5'
29389 5' -56.5 NC_006151.1 + 20495 0.67 0.816768
Target:  5'- gUCGUCGGCGGC-UCugGCucgaucggGGGCg -3'
miRNA:   3'- -AGCAGUCGCUGcAGugCGucga----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 64456 0.67 0.816768
Target:  5'- cCGUCAggaugGCGGCG-CGCGCcgccgcGGCggGGACg -3'
miRNA:   3'- aGCAGU-----CGCUGCaGUGCG------UCGa-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 112608 0.67 0.816768
Target:  5'- cCG-CGGCGcCG-CugGC-GCUGGACg -3'
miRNA:   3'- aGCaGUCGCuGCaGugCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 23760 0.67 0.811545
Target:  5'- cCGUCaaagaaccaGGCGACgGUCACGUugacgggguccgaggAGCgGGACg -3'
miRNA:   3'- aGCAG---------UCGCUG-CAGUGCG---------------UCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 103968 0.68 0.799132
Target:  5'- gCGcCAGCG-CGUCG-GCgAGCUGGAg -3'
miRNA:   3'- aGCaGUCGCuGCAGUgCG-UCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 103667 0.68 0.799132
Target:  5'- gCGgagaaGGCGGCG-CGCGCGGCgGGGg -3'
miRNA:   3'- aGCag---UCGCUGCaGUGCGUCGaCCUg -5'
29389 5' -56.5 NC_006151.1 + 70791 0.68 0.796433
Target:  5'- cCGgcacCGGCGuggcCGUCgugggcagcuaccgGCGCAGCUGGAUc -3'
miRNA:   3'- aGCa---GUCGCu---GCAG--------------UGCGUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 127838 0.68 0.790083
Target:  5'- aCGU-GGCGGCGUCGCGgCuGCgccggaggGGGCg -3'
miRNA:   3'- aGCAgUCGCUGCAGUGC-GuCGa-------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 47764 0.68 0.790083
Target:  5'- gCGau-GCGGCGaUCGCGCcgAGCUGGAa -3'
miRNA:   3'- aGCaguCGCUGC-AGUGCG--UCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 122987 0.68 0.785505
Target:  5'- gCGUCGGCGACGaagacgggcccggCGCGCccccgccGGC-GGACg -3'
miRNA:   3'- aGCAGUCGCUGCa------------GUGCG-------UCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 126271 0.68 0.780892
Target:  5'- gCGUCgacgaaGGCGACGUgGaCGaggccaAGCUGGACc -3'
miRNA:   3'- aGCAG------UCGCUGCAgU-GCg-----UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 67760 0.68 0.780892
Target:  5'- cCGUCGggguGCGGCGUCGCGUuGa-GGGCg -3'
miRNA:   3'- aGCAGU----CGCUGCAGUGCGuCgaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 57262 0.68 0.780892
Target:  5'- gCG-CGGCccucGACGgccUCGCGCAGCaGGGCg -3'
miRNA:   3'- aGCaGUCG----CUGC---AGUGCGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 77898 0.68 0.780892
Target:  5'- cCGcUCAGCGGCGagACGCGGCccacGGcCg -3'
miRNA:   3'- aGC-AGUCGCUGCagUGCGUCGa---CCuG- -5'
29389 5' -56.5 NC_006151.1 + 128030 0.68 0.771567
Target:  5'- gCGUCuGCGACGcC-CGCGGCaGcGGCg -3'
miRNA:   3'- aGCAGuCGCUGCaGuGCGUCGaC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 54092 0.68 0.771567
Target:  5'- gCGgCGGCGGCGgcCAUGuCGGCUGcGACg -3'
miRNA:   3'- aGCaGUCGCUGCa-GUGC-GUCGAC-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.