miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 31759 0.66 0.857785
Target:  5'- gCGccugCGGCGGCGggCGCGC-GCcGGGCg -3'
miRNA:   3'- aGCa---GUCGCUGCa-GUGCGuCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 104908 0.66 0.857785
Target:  5'- aCG-CGGCGGCGgCGCGCGaccGCgacgGGGCc -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCGU---CGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 85879 0.66 0.857785
Target:  5'- cCGUCAaCGAgGUCAuCGCGGCgcacGACg -3'
miRNA:   3'- aGCAGUcGCUgCAGU-GCGUCGac--CUG- -5'
29389 5' -56.5 NC_006151.1 + 130780 0.66 0.857785
Target:  5'- cCGUCGG-GcAUGUCGCGCguccAGCUGG-Cg -3'
miRNA:   3'- aGCAGUCgC-UGCAGUGCG----UCGACCuG- -5'
29389 5' -56.5 NC_006151.1 + 103634 0.67 0.849963
Target:  5'- gCGguggCGGCGGCG-CugGCGGacgcGGACa -3'
miRNA:   3'- aGCa---GUCGCUGCaGugCGUCga--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 23874 0.67 0.849963
Target:  5'- gCGUUGGCGGgGgcgagcggguUCACG-GGCUGGGCg -3'
miRNA:   3'- aGCAGUCGCUgC----------AGUGCgUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 66541 0.67 0.849963
Target:  5'- cUCuUCGGgGGCG-CGCGCGGCcgcgccgccgUGGACc -3'
miRNA:   3'- -AGcAGUCgCUGCaGUGCGUCG----------ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 77617 0.67 0.849963
Target:  5'- --cUCuGCGGcCG-CGCGgAGCUGGACg -3'
miRNA:   3'- agcAGuCGCU-GCaGUGCgUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 103846 0.67 0.849963
Target:  5'- cUCGggCGGCuGCG-CGCGCAGCccgacgaggGGACg -3'
miRNA:   3'- -AGCa-GUCGcUGCaGUGCGUCGa--------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 100684 0.67 0.849963
Target:  5'- cUCGUC-GCGACGcUC-CGCGagacCUGGACc -3'
miRNA:   3'- -AGCAGuCGCUGC-AGuGCGUc---GACCUG- -5'
29389 5' -56.5 NC_006151.1 + 125509 0.67 0.849963
Target:  5'- aUGcUCGGCGACGugauggccaucUCGCGguGCgUGGAg -3'
miRNA:   3'- aGC-AGUCGCUGC-----------AGUGCguCG-ACCUg -5'
29389 5' -56.5 NC_006151.1 + 104401 0.67 0.84917
Target:  5'- aUCGcCGGCGGCGUgCugGCccgcgccgccgccGGCaugGGGCg -3'
miRNA:   3'- -AGCaGUCGCUGCA-GugCG-------------UCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 106163 0.67 0.84917
Target:  5'- uUCGg-GGCGcuggaccGCGUCGCGCAcccgccGCUGGAg -3'
miRNA:   3'- -AGCagUCGC-------UGCAGUGCGU------CGACCUg -5'
29389 5' -56.5 NC_006151.1 + 29966 0.67 0.841943
Target:  5'- cUCGgaccgCGGCGAUGgugaaugggCcCGCGGCcUGGACg -3'
miRNA:   3'- -AGCa----GUCGCUGCa--------GuGCGUCG-ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 122447 0.67 0.841943
Target:  5'- gCGgaGGCGGCGUcCACgGCGGCggcGGGCg -3'
miRNA:   3'- aGCagUCGCUGCA-GUG-CGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 133601 0.67 0.833733
Target:  5'- gUCGUCguaggccgAGgGGCGUCuggggguCGCGGCggccgGGGCg -3'
miRNA:   3'- -AGCAG--------UCgCUGCAGu------GCGUCGa----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 94043 0.67 0.833733
Target:  5'- cUCGcgCGccGCGGCGUCGcCGCggaacagcaucAGCUGGAUg -3'
miRNA:   3'- -AGCa-GU--CGCUGCAGU-GCG-----------UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 21459 0.67 0.833733
Target:  5'- cCGgCGGCGugGUCcCGCgucgccGGCUcGGGCa -3'
miRNA:   3'- aGCaGUCGCugCAGuGCG------UCGA-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 84037 0.67 0.833733
Target:  5'- gCGUguGCGugGU---GCGGCUGGGg -3'
miRNA:   3'- aGCAguCGCugCAgugCGUCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 40566 0.67 0.833733
Target:  5'- gCGgCGGCGGCGgC-CGCGGCggaGGGCu -3'
miRNA:   3'- aGCaGUCGCUGCaGuGCGUCGa--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.