miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 139602 0.7 0.683144
Target:  5'- cCGagCGGCGGCccGUCcggGCGCGGCUGGGg -3'
miRNA:   3'- aGCa-GUCGCUG--CAG---UGCGUCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 136990 0.69 0.703322
Target:  5'- cCGggCGGCgGGCGcgCGCGCAcggcGCUGGGCg -3'
miRNA:   3'- aGCa-GUCG-CUGCa-GUGCGU----CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 49841 0.69 0.703322
Target:  5'- aCGgCGGCGGCGggCcCGC-GCUGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCa-GuGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 21331 0.69 0.713325
Target:  5'- cCGgcgCGGCgGGgGUC-CGCGGCUGGAa -3'
miRNA:   3'- aGCa--GUCG-CUgCAGuGCGUCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 135103 0.69 0.713325
Target:  5'- cCGggcgGGCGGCGguagCGCGCggggcgGGCUGGGCg -3'
miRNA:   3'- aGCag--UCGCUGCa---GUGCG------UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 134188 0.69 0.713325
Target:  5'- cCGgauacGCGAugcuCGUCGCGCAGCgcggGGGCg -3'
miRNA:   3'- aGCagu--CGCU----GCAGUGCGUCGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 127451 0.69 0.713325
Target:  5'- -aGcCGGCGGCG-CACGaagcGCUGGGCg -3'
miRNA:   3'- agCaGUCGCUGCaGUGCgu--CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 105048 0.69 0.713325
Target:  5'- cUGcUCGGCGcCGUCgaggagGCGCccgAGCUGGACg -3'
miRNA:   3'- aGC-AGUCGCuGCAG------UGCG---UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 57229 0.69 0.723259
Target:  5'- cCGUCgcaGGCGGCG-CGCGCGGCcucGGCg -3'
miRNA:   3'- aGCAG---UCGCUGCaGUGCGUCGac-CUG- -5'
29389 5' -56.5 NC_006151.1 + 54593 0.69 0.733114
Target:  5'- aUCGugugccUCGGCGugGUCcCGguGCgccGGGCg -3'
miRNA:   3'- -AGC------AGUCGCugCAGuGCguCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 115160 0.69 0.742882
Target:  5'- cCGaaGGCGGCGaagcCGCGCGGCaggGGGCg -3'
miRNA:   3'- aGCagUCGCUGCa---GUGCGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 102402 0.69 0.742882
Target:  5'- gUCG-CGGCGcGCGUCGCGCGGCcc-GCg -3'
miRNA:   3'- -AGCaGUCGC-UGCAGUGCGUCGaccUG- -5'
29389 5' -56.5 NC_006151.1 + 117698 0.69 0.742882
Target:  5'- cUCGcUCAgGCG-CGUCACGUAGCUGc-- -3'
miRNA:   3'- -AGC-AGU-CGCuGCAGUGCGUCGACcug -5'
29389 5' -56.5 NC_006151.1 + 103385 0.69 0.752553
Target:  5'- aUG-CGGCuGCG-CGCGCuGCUGGGCg -3'
miRNA:   3'- aGCaGUCGcUGCaGUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 59938 0.69 0.752553
Target:  5'- cCGUCAGCGGCGgcuCGCAGCc---- -3'
miRNA:   3'- aGCAGUCGCUGCaguGCGUCGaccug -5'
29389 5' -56.5 NC_006151.1 + 102333 0.68 0.762118
Target:  5'- aCGgaGGCG-CG-CGCGCuGCUGGACg -3'
miRNA:   3'- aGCagUCGCuGCaGUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 58717 0.68 0.768745
Target:  5'- cCGcCAGCGcccccgugccgcucGCGUCGCGCAGCgccGcGGCc -3'
miRNA:   3'- aGCaGUCGC--------------UGCAGUGCGUCGa--C-CUG- -5'
29389 5' -56.5 NC_006151.1 + 54092 0.68 0.771567
Target:  5'- gCGgCGGCGGCGgcCAUGuCGGCUGcGACg -3'
miRNA:   3'- aGCaGUCGCUGCa-GUGC-GUCGAC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 128030 0.68 0.771567
Target:  5'- gCGUCuGCGACGcC-CGCGGCaGcGGCg -3'
miRNA:   3'- aGCAGuCGCUGCaGuGCGUCGaC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 103813 0.68 0.771567
Target:  5'- cUGUCGGCGGcCGUgGCGgCGGCcgUGGAg -3'
miRNA:   3'- aGCAGUCGCU-GCAgUGC-GUCG--ACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.