miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 124957 1.09 0.002445
Target:  5'- uUCGUCAGCGACGUCACGCAGCUGGACc -3'
miRNA:   3'- -AGCAGUCGCUGCAGUGCGUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 116103 0.75 0.41844
Target:  5'- cUCGUCGGCGAUG--GCGCGGCgcuugucGGGCa -3'
miRNA:   3'- -AGCAGUCGCUGCagUGCGUCGa------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 58395 0.74 0.427271
Target:  5'- gCGgcgCAGcCGGCcauggCGCGCAGCUGGGCg -3'
miRNA:   3'- aGCa--GUC-GCUGca---GUGCGUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 88390 0.73 0.473008
Target:  5'- gCGUCcGCGGCGUC-CGCGGCcgcgaggcccgGGACg -3'
miRNA:   3'- aGCAGuCGCUGCAGuGCGUCGa----------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 99365 0.73 0.480556
Target:  5'- gUCGUCGGCGGCGUCGugcaccgccuccuCGaCgacuacgggcccgGGCUGGACu -3'
miRNA:   3'- -AGCAGUCGCUGCAGU-------------GC-G-------------UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 73688 0.73 0.491028
Target:  5'- cUCGUCGGCGcggcucuGCGcCGCGU-GCUGGGCc -3'
miRNA:   3'- -AGCAGUCGC-------UGCaGUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 86292 0.73 0.491985
Target:  5'- uUCcUCGGCGuCGUCAacugccCGCAGCUGGGg -3'
miRNA:   3'- -AGcAGUCGCuGCAGU------GCGUCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 97365 0.72 0.530933
Target:  5'- gCGgCGGCGGCGg-GCGCGGCggGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCagUGCGUCGa-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 17485 0.71 0.601427
Target:  5'- cUCGUCGGCGGCG-CGcCGCuGCUGcACc -3'
miRNA:   3'- -AGCAGUCGCUGCaGU-GCGuCGACcUG- -5'
29389 5' -56.5 NC_006151.1 + 131867 0.71 0.632113
Target:  5'- gCGcCGGCGGCGUCGgGUcGCaGGGCa -3'
miRNA:   3'- aGCaGUCGCUGCAGUgCGuCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 64609 0.71 0.632113
Target:  5'- aCGcCAGCGGCGcCGCGCcgccGGCcgcgGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCG----UCGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 4076 0.7 0.652583
Target:  5'- gCGcacCAGCGGCGcCACGguGC-GGGCg -3'
miRNA:   3'- aGCa--GUCGCUGCaGUGCguCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 71960 0.7 0.652583
Target:  5'- cCGccUCGGCGuuGUCGCGguGCggcggGGGCa -3'
miRNA:   3'- aGC--AGUCGCugCAGUGCguCGa----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 122295 0.7 0.656671
Target:  5'- gCGUguGCGACcaccUCACGCGGCagcuggcggugcgcgUGGACc -3'
miRNA:   3'- aGCAguCGCUGc---AGUGCGUCG---------------ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 130855 0.7 0.662798
Target:  5'- cCGUCGGCGGCG-CGggcgggacCGCAG-UGGGCg -3'
miRNA:   3'- aGCAGUCGCUGCaGU--------GCGUCgACCUG- -5'
29389 5' -56.5 NC_006151.1 + 95291 0.7 0.662798
Target:  5'- aCGgCGGCGACG-CGCGCGGCccGGCg -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCGUCGacCUG- -5'
29389 5' -56.5 NC_006151.1 + 26970 0.7 0.662798
Target:  5'- cUCGcgCAGCG-CGcUGCGCAGCgGGGCg -3'
miRNA:   3'- -AGCa-GUCGCuGCaGUGCGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 135752 0.7 0.662798
Target:  5'- gUCGUCucguacGCGugGgacgGCGCcgGGCUGGACg -3'
miRNA:   3'- -AGCAGu-----CGCugCag--UGCG--UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 68264 0.7 0.672987
Target:  5'- gCG-CGGCGACGgu-CGCGGCgccGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCaguGCGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 139602 0.7 0.683144
Target:  5'- cCGagCGGCGGCccGUCcggGCGCGGCUGGGg -3'
miRNA:   3'- aGCa-GUCGCUG--CAG---UGCGUCGACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.