miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 4076 0.7 0.652583
Target:  5'- gCGcacCAGCGGCGcCACGguGC-GGGCg -3'
miRNA:   3'- aGCa--GUCGCUGCaGUGCguCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 4306 0.68 0.771567
Target:  5'- cCGcCAGCucGCGgggCACGCGGCcGGGCu -3'
miRNA:   3'- aGCaGUCGc-UGCa--GUGCGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 17485 0.71 0.601427
Target:  5'- cUCGUCGGCGGCG-CGcCGCuGCUGcACc -3'
miRNA:   3'- -AGCAGUCGCUGCaGU-GCGuCGACcUG- -5'
29389 5' -56.5 NC_006151.1 + 20495 0.67 0.816768
Target:  5'- gUCGUCGGCGGC-UCugGCucgaucggGGGCg -3'
miRNA:   3'- -AGCAGUCGCUGcAGugCGucga----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 21331 0.69 0.713325
Target:  5'- cCGgcgCGGCgGGgGUC-CGCGGCUGGAa -3'
miRNA:   3'- aGCa--GUCG-CUgCAGuGCGUCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 21459 0.67 0.833733
Target:  5'- cCGgCGGCGugGUCcCGCgucgccGGCUcGGGCa -3'
miRNA:   3'- aGCaGUCGCugCAGuGCG------UCGA-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 23760 0.67 0.811545
Target:  5'- cCGUCaaagaaccaGGCGACgGUCACGUugacgggguccgaggAGCgGGACg -3'
miRNA:   3'- aGCAG---------UCGCUG-CAGUGCG---------------UCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 23874 0.67 0.849963
Target:  5'- gCGUUGGCGGgGgcgagcggguUCACG-GGCUGGGCg -3'
miRNA:   3'- aGCAGUCGCUgC----------AGUGCgUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 25079 0.66 0.868392
Target:  5'- cUCGUCGGggauucCGGCGUCGgccauuguugcugcgUGCGagcGCUGGGCg -3'
miRNA:   3'- -AGCAGUC------GCUGCAGU---------------GCGU---CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 26970 0.7 0.662798
Target:  5'- cUCGcgCAGCG-CGcUGCGCAGCgGGGCg -3'
miRNA:   3'- -AGCa-GUCGCuGCaGUGCGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 29966 0.67 0.841943
Target:  5'- cUCGgaccgCGGCGAUGgugaaugggCcCGCGGCcUGGACg -3'
miRNA:   3'- -AGCa----GUCGCUGCa--------GuGCGUCG-ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 31759 0.66 0.857785
Target:  5'- gCGccugCGGCGGCGggCGCGC-GCcGGGCg -3'
miRNA:   3'- aGCa---GUCGCUGCa-GUGCGuCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 40566 0.67 0.833733
Target:  5'- gCGgCGGCGGCGgC-CGCGGCggaGGGCu -3'
miRNA:   3'- aGCaGUCGCUGCaGuGCGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 47764 0.68 0.790083
Target:  5'- gCGau-GCGGCGaUCGCGCcgAGCUGGAa -3'
miRNA:   3'- aGCaguCGCUGC-AGUGCG--UCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 49841 0.69 0.703322
Target:  5'- aCGgCGGCGGCGggCcCGC-GCUGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCa-GuGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 54092 0.68 0.771567
Target:  5'- gCGgCGGCGGCGgcCAUGuCGGCUGcGACg -3'
miRNA:   3'- aGCaGUCGCUGCa-GUGC-GUCGAC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 54593 0.69 0.733114
Target:  5'- aUCGugugccUCGGCGugGUCcCGguGCgccGGGCg -3'
miRNA:   3'- -AGC------AGUCGCugCAGuGCguCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 54642 0.66 0.880003
Target:  5'- -aG-CGGCGGCGcgaGCGCuGCgUGGACg -3'
miRNA:   3'- agCaGUCGCUGCag-UGCGuCG-ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 57229 0.69 0.723259
Target:  5'- cCGUCgcaGGCGGCG-CGCGCGGCcucGGCg -3'
miRNA:   3'- aGCAG---UCGCUGCaGUGCGUCGac-CUG- -5'
29389 5' -56.5 NC_006151.1 + 57262 0.68 0.780892
Target:  5'- gCG-CGGCccucGACGgccUCGCGCAGCaGGGCg -3'
miRNA:   3'- aGCaGUCG----CUGC---AGUGCGUCGaCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.