miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 139602 0.7 0.683144
Target:  5'- cCGagCGGCGGCccGUCcggGCGCGGCUGGGg -3'
miRNA:   3'- aGCa-GUCGCUG--CAG---UGCGUCGACCUg -5'
29389 5' -56.5 NC_006151.1 + 136990 0.69 0.703322
Target:  5'- cCGggCGGCgGGCGcgCGCGCAcggcGCUGGGCg -3'
miRNA:   3'- aGCa-GUCG-CUGCa-GUGCGU----CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 135752 0.7 0.662798
Target:  5'- gUCGUCucguacGCGugGgacgGCGCcgGGCUGGACg -3'
miRNA:   3'- -AGCAGu-----CGCugCag--UGCG--UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 135103 0.69 0.713325
Target:  5'- cCGggcgGGCGGCGguagCGCGCggggcgGGCUGGGCg -3'
miRNA:   3'- aGCag--UCGCUGCa---GUGCG------UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 134188 0.69 0.713325
Target:  5'- cCGgauacGCGAugcuCGUCGCGCAGCgcggGGGCg -3'
miRNA:   3'- aGCagu--CGCU----GCAGUGCGUCGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 133601 0.67 0.833733
Target:  5'- gUCGUCguaggccgAGgGGCGUCuggggguCGCGGCggccgGGGCg -3'
miRNA:   3'- -AGCAG--------UCgCUGCAGu------GCGUCGa----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 133214 0.67 0.825338
Target:  5'- cUUGUUgaaGGCGuGCGUCGCGCcGCgccaGGGCa -3'
miRNA:   3'- -AGCAG---UCGC-UGCAGUGCGuCGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 132141 0.66 0.87208
Target:  5'- gCGcCGGCggugguuGACGgCGCGCAGCUGcGCg -3'
miRNA:   3'- aGCaGUCG-------CUGCaGUGCGUCGACcUG- -5'
29389 5' -56.5 NC_006151.1 + 131900 0.66 0.89372
Target:  5'- cCGagGGCGACGgggGCgGCAGCaGGGCc -3'
miRNA:   3'- aGCagUCGCUGCag-UG-CGUCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 131867 0.71 0.632113
Target:  5'- gCGcCGGCGGCGUCGgGUcGCaGGGCa -3'
miRNA:   3'- aGCaGUCGCUGCAGUgCGuCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 131101 0.66 0.89372
Target:  5'- aCGUCGGCGGgGggcccggC-CGCGGCgcgGGAg -3'
miRNA:   3'- aGCAGUCGCUgCa------GuGCGUCGa--CCUg -5'
29389 5' -56.5 NC_006151.1 + 130855 0.7 0.662798
Target:  5'- cCGUCGGCGGCG-CGggcgggacCGCAG-UGGGCg -3'
miRNA:   3'- aGCAGUCGCUGCaGU--------GCGUCgACCUG- -5'
29389 5' -56.5 NC_006151.1 + 130780 0.66 0.857785
Target:  5'- cCGUCGG-GcAUGUCGCGCguccAGCUGG-Cg -3'
miRNA:   3'- aGCAGUCgC-UGCAGUGCG----UCGACCuG- -5'
29389 5' -56.5 NC_006151.1 + 130668 0.7 0.683144
Target:  5'- aCGUCAGUGcccGCGggGCGCGGCgcaGGAUg -3'
miRNA:   3'- aGCAGUCGC---UGCagUGCGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 128030 0.68 0.771567
Target:  5'- gCGUCuGCGACGcC-CGCGGCaGcGGCg -3'
miRNA:   3'- aGCAGuCGCUGCaGuGCGUCGaC-CUG- -5'
29389 5' -56.5 NC_006151.1 + 127838 0.68 0.790083
Target:  5'- aCGU-GGCGGCGUCGCGgCuGCgccggaggGGGCg -3'
miRNA:   3'- aGCAgUCGCUGCAGUGC-GuCGa-------CCUG- -5'
29389 5' -56.5 NC_006151.1 + 127451 0.69 0.713325
Target:  5'- -aGcCGGCGGCG-CACGaagcGCUGGGCg -3'
miRNA:   3'- agCaGUCGCUGCaGUGCgu--CGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 126271 0.68 0.780892
Target:  5'- gCGUCgacgaaGGCGACGUgGaCGaggccaAGCUGGACc -3'
miRNA:   3'- aGCAG------UCGCUGCAgU-GCg-----UCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 125509 0.67 0.849963
Target:  5'- aUGcUCGGCGACGugauggccaucUCGCGguGCgUGGAg -3'
miRNA:   3'- aGC-AGUCGCUGC-----------AGUGCguCG-ACCUg -5'
29389 5' -56.5 NC_006151.1 + 124957 1.09 0.002445
Target:  5'- uUCGUCAGCGACGUCACGCAGCUGGACc -3'
miRNA:   3'- -AGCAGUCGCUGCAGUGCGUCGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.