miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 5' -56.5 NC_006151.1 + 57979 0.66 0.89372
Target:  5'- -gGUgGGCGGCGagCGCGCcGC-GGACc -3'
miRNA:   3'- agCAgUCGCUGCa-GUGCGuCGaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 58395 0.74 0.427271
Target:  5'- gCGgcgCAGcCGGCcauggCGCGCAGCUGGGCg -3'
miRNA:   3'- aGCa--GUC-GCUGca---GUGCGUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 58717 0.68 0.768745
Target:  5'- cCGcCAGCGcccccgugccgcucGCGUCGCGCAGCgccGcGGCc -3'
miRNA:   3'- aGCaGUCGC--------------UGCAGUGCGUCGa--C-CUG- -5'
29389 5' -56.5 NC_006151.1 + 59156 0.68 0.771567
Target:  5'- -gGUCcaGGcCGGCGUCGCGCAGCagcGcGGCg -3'
miRNA:   3'- agCAG--UC-GCUGCAGUGCGUCGa--C-CUG- -5'
29389 5' -56.5 NC_006151.1 + 59938 0.69 0.752553
Target:  5'- cCGUCAGCGGCGgcuCGCAGCc---- -3'
miRNA:   3'- aGCAGUCGCUGCaguGCGUCGaccug -5'
29389 5' -56.5 NC_006151.1 + 64456 0.67 0.816768
Target:  5'- cCGUCAggaugGCGGCG-CGCGCcgccgcGGCggGGACg -3'
miRNA:   3'- aGCAGU-----CGCUGCaGUGCG------UCGa-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 64542 0.66 0.878582
Target:  5'- gCGUCGGgGGCGgcgaggccguggCGCGCcAGCUcGACg -3'
miRNA:   3'- aGCAGUCgCUGCa-----------GUGCG-UCGAcCUG- -5'
29389 5' -56.5 NC_006151.1 + 64609 0.71 0.632113
Target:  5'- aCGcCAGCGGCGcCGCGCcgccGGCcgcgGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCG----UCGa---CCUG- -5'
29389 5' -56.5 NC_006151.1 + 66541 0.67 0.849963
Target:  5'- cUCuUCGGgGGCG-CGCGCGGCcgcgccgccgUGGACc -3'
miRNA:   3'- -AGcAGUCgCUGCaGUGCGUCG----------ACCUG- -5'
29389 5' -56.5 NC_006151.1 + 66950 0.66 0.886974
Target:  5'- -aGgCGGCGGCGggCGCgGCAcGCUGGAg -3'
miRNA:   3'- agCaGUCGCUGCa-GUG-CGU-CGACCUg -5'
29389 5' -56.5 NC_006151.1 + 67597 0.66 0.864651
Target:  5'- cUCGgaGGCGACGUCGacgaucuUGCGGCgggGGAg -3'
miRNA:   3'- -AGCagUCGCUGCAGU-------GCGUCGa--CCUg -5'
29389 5' -56.5 NC_006151.1 + 67760 0.68 0.780892
Target:  5'- cCGUCGggguGCGGCGUCGCGUuGa-GGGCg -3'
miRNA:   3'- aGCAGU----CGCUGCAGUGCGuCgaCCUG- -5'
29389 5' -56.5 NC_006151.1 + 68264 0.7 0.672987
Target:  5'- gCG-CGGCGACGgu-CGCGGCgccGGGCg -3'
miRNA:   3'- aGCaGUCGCUGCaguGCGUCGa--CCUG- -5'
29389 5' -56.5 NC_006151.1 + 68766 0.66 0.880003
Target:  5'- cCGgCGGUGGCG-CGCGCGGCgaGGuGCg -3'
miRNA:   3'- aGCaGUCGCUGCaGUGCGUCGa-CC-UG- -5'
29389 5' -56.5 NC_006151.1 + 70791 0.68 0.796433
Target:  5'- cCGgcacCGGCGuggcCGUCgugggcagcuaccgGCGCAGCUGGAUc -3'
miRNA:   3'- aGCa---GUCGCu---GCAG--------------UGCGUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 71960 0.7 0.652583
Target:  5'- cCGccUCGGCGuuGUCGCGguGCggcggGGGCa -3'
miRNA:   3'- aGC--AGUCGCugCAGUGCguCGa----CCUG- -5'
29389 5' -56.5 NC_006151.1 + 73688 0.73 0.491028
Target:  5'- cUCGUCGGCGcggcucuGCGcCGCGU-GCUGGGCc -3'
miRNA:   3'- -AGCAGUCGC-------UGCaGUGCGuCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 76791 0.66 0.886974
Target:  5'- -aGUCGGCGcCGUacaGCGCcccGGCgaGGGCg -3'
miRNA:   3'- agCAGUCGCuGCAg--UGCG---UCGa-CCUG- -5'
29389 5' -56.5 NC_006151.1 + 77617 0.67 0.849963
Target:  5'- --cUCuGCGGcCG-CGCGgAGCUGGACg -3'
miRNA:   3'- agcAGuCGCU-GCaGUGCgUCGACCUG- -5'
29389 5' -56.5 NC_006151.1 + 77898 0.68 0.780892
Target:  5'- cCGcUCAGCGGCGagACGCGGCccacGGcCg -3'
miRNA:   3'- aGC-AGUCGCUGCagUGCGUCGa---CCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.