Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29390 | 5' | -56.5 | NC_006151.1 | + | 67821 | 0.66 | 0.89261 |
Target: 5'- aGCUGCCgCCGUCGucgUCgcggGGGCUCaGCa -3' miRNA: 3'- aUGAUGG-GGUAGCu--GGa---CCUGAG-CGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 138946 | 0.66 | 0.885822 |
Target: 5'- aGCUACaCCAaguUCG-CCUGGuacauggccgaGCUCGCGa -3' miRNA: 3'- aUGAUGgGGU---AGCuGGACC-----------UGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 19801 | 0.66 | 0.885822 |
Target: 5'- ----gUCCCAgaccUCGGCCgagGGACUCGgGa -3' miRNA: 3'- augauGGGGU----AGCUGGa--CCUGAGCgC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 107063 | 0.66 | 0.878808 |
Target: 5'- -cCUGCCUCGU--GCUggUGGACUCGCa -3' miRNA: 3'- auGAUGGGGUAgcUGG--ACCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 56470 | 0.66 | 0.876661 |
Target: 5'- cACUACCCCAUCGcccagcGCCUgcugucggccccccGGGCcccgcccgUCGUGg -3' miRNA: 3'- aUGAUGGGGUAGC------UGGA--------------CCUG--------AGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 115900 | 0.66 | 0.871575 |
Target: 5'- cGCU-CCCCGUUGACCUcGAaggCGCu -3' miRNA: 3'- aUGAuGGGGUAGCUGGAcCUga-GCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 75849 | 0.66 | 0.871575 |
Target: 5'- aGC-ACCCCGUCGACg-GGGCgccccUGCGu -3' miRNA: 3'- aUGaUGGGGUAGCUGgaCCUGa----GCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 28117 | 0.66 | 0.864126 |
Target: 5'- gGCU-CCUCGUCGGCUcgGGGCgCGCu -3' miRNA: 3'- aUGAuGGGGUAGCUGGa-CCUGaGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 67753 | 0.66 | 0.864126 |
Target: 5'- gGCgGCCCCGUCGGggUGcGGCgUCGCGu -3' miRNA: 3'- aUGaUGGGGUAGCUggAC-CUG-AGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 66562 | 0.66 | 0.864126 |
Target: 5'- cGC-GCCgCCGUgGACCcGGcGCUCGCGc -3' miRNA: 3'- aUGaUGG-GGUAgCUGGaCC-UGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 50429 | 0.66 | 0.859556 |
Target: 5'- gGC-GCCCCugcgcgccggCGGCCUGGgcaccgcccgcgggcGCUCGCGc -3' miRNA: 3'- aUGaUGGGGua--------GCUGGACC---------------UGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 118102 | 0.66 | 0.856467 |
Target: 5'- cGCUGCgCCG-CGACCUGcuggcgcuGCUCGUGg -3' miRNA: 3'- aUGAUGgGGUaGCUGGACc-------UGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 39131 | 0.66 | 0.856467 |
Target: 5'- gGC-GCCCCGcgccCGGCCUGGgACcCGCGc -3' miRNA: 3'- aUGaUGGGGUa---GCUGGACC-UGaGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 51340 | 0.67 | 0.848606 |
Target: 5'- gGCU-CCCCGUccaCGGCCaGGAC-CGUGa -3' miRNA: 3'- aUGAuGGGGUA---GCUGGaCCUGaGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 6872 | 0.67 | 0.848606 |
Target: 5'- -cUUGCCCCAUCGACggccaaUGGGauuucuCUCGCc -3' miRNA: 3'- auGAUGGGGUAGCUGg-----ACCU------GAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 48940 | 0.67 | 0.847808 |
Target: 5'- gUGCUGCCCgCGcgcgaggacguguUCG-CCUGGACgCGCc -3' miRNA: 3'- -AUGAUGGG-GU-------------AGCuGGACCUGaGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 24345 | 0.67 | 0.840547 |
Target: 5'- gUGCaucuCCCCGUUGAUCgcGGGCUCGUc -3' miRNA: 3'- -AUGau--GGGGUAGCUGGa-CCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 120339 | 0.67 | 0.832298 |
Target: 5'- cGCgcgcGCCCgCGU-GGCC-GGGCUCGCGg -3' miRNA: 3'- aUGa---UGGG-GUAgCUGGaCCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 77651 | 0.67 | 0.832298 |
Target: 5'- -cCUACCUCGUCGAgUgcaUGGuCUCGCu -3' miRNA: 3'- auGAUGGGGUAGCUgG---ACCuGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 124448 | 0.67 | 0.823867 |
Target: 5'- gACgagaACCCCGUCGAggUGGACcUGCGc -3' miRNA: 3'- aUGa---UGGGGUAGCUggACCUGaGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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