miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 5' -56.5 NC_006151.1 + 67821 0.66 0.89261
Target:  5'- aGCUGCCgCCGUCGucgUCgcggGGGCUCaGCa -3'
miRNA:   3'- aUGAUGG-GGUAGCu--GGa---CCUGAG-CGc -5'
29390 5' -56.5 NC_006151.1 + 138946 0.66 0.885822
Target:  5'- aGCUACaCCAaguUCG-CCUGGuacauggccgaGCUCGCGa -3'
miRNA:   3'- aUGAUGgGGU---AGCuGGACC-----------UGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 19801 0.66 0.885822
Target:  5'- ----gUCCCAgaccUCGGCCgagGGACUCGgGa -3'
miRNA:   3'- augauGGGGU----AGCUGGa--CCUGAGCgC- -5'
29390 5' -56.5 NC_006151.1 + 107063 0.66 0.878808
Target:  5'- -cCUGCCUCGU--GCUggUGGACUCGCa -3'
miRNA:   3'- auGAUGGGGUAgcUGG--ACCUGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 56470 0.66 0.876661
Target:  5'- cACUACCCCAUCGcccagcGCCUgcugucggccccccGGGCcccgcccgUCGUGg -3'
miRNA:   3'- aUGAUGGGGUAGC------UGGA--------------CCUG--------AGCGC- -5'
29390 5' -56.5 NC_006151.1 + 115900 0.66 0.871575
Target:  5'- cGCU-CCCCGUUGACCUcGAaggCGCu -3'
miRNA:   3'- aUGAuGGGGUAGCUGGAcCUga-GCGc -5'
29390 5' -56.5 NC_006151.1 + 75849 0.66 0.871575
Target:  5'- aGC-ACCCCGUCGACg-GGGCgccccUGCGu -3'
miRNA:   3'- aUGaUGGGGUAGCUGgaCCUGa----GCGC- -5'
29390 5' -56.5 NC_006151.1 + 28117 0.66 0.864126
Target:  5'- gGCU-CCUCGUCGGCUcgGGGCgCGCu -3'
miRNA:   3'- aUGAuGGGGUAGCUGGa-CCUGaGCGc -5'
29390 5' -56.5 NC_006151.1 + 67753 0.66 0.864126
Target:  5'- gGCgGCCCCGUCGGggUGcGGCgUCGCGu -3'
miRNA:   3'- aUGaUGGGGUAGCUggAC-CUG-AGCGC- -5'
29390 5' -56.5 NC_006151.1 + 66562 0.66 0.864126
Target:  5'- cGC-GCCgCCGUgGACCcGGcGCUCGCGc -3'
miRNA:   3'- aUGaUGG-GGUAgCUGGaCC-UGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 50429 0.66 0.859556
Target:  5'- gGC-GCCCCugcgcgccggCGGCCUGGgcaccgcccgcgggcGCUCGCGc -3'
miRNA:   3'- aUGaUGGGGua--------GCUGGACC---------------UGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 118102 0.66 0.856467
Target:  5'- cGCUGCgCCG-CGACCUGcuggcgcuGCUCGUGg -3'
miRNA:   3'- aUGAUGgGGUaGCUGGACc-------UGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 39131 0.66 0.856467
Target:  5'- gGC-GCCCCGcgccCGGCCUGGgACcCGCGc -3'
miRNA:   3'- aUGaUGGGGUa---GCUGGACC-UGaGCGC- -5'
29390 5' -56.5 NC_006151.1 + 51340 0.67 0.848606
Target:  5'- gGCU-CCCCGUccaCGGCCaGGAC-CGUGa -3'
miRNA:   3'- aUGAuGGGGUA---GCUGGaCCUGaGCGC- -5'
29390 5' -56.5 NC_006151.1 + 6872 0.67 0.848606
Target:  5'- -cUUGCCCCAUCGACggccaaUGGGauuucuCUCGCc -3'
miRNA:   3'- auGAUGGGGUAGCUGg-----ACCU------GAGCGc -5'
29390 5' -56.5 NC_006151.1 + 48940 0.67 0.847808
Target:  5'- gUGCUGCCCgCGcgcgaggacguguUCG-CCUGGACgCGCc -3'
miRNA:   3'- -AUGAUGGG-GU-------------AGCuGGACCUGaGCGc -5'
29390 5' -56.5 NC_006151.1 + 24345 0.67 0.840547
Target:  5'- gUGCaucuCCCCGUUGAUCgcGGGCUCGUc -3'
miRNA:   3'- -AUGau--GGGGUAGCUGGa-CCUGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 120339 0.67 0.832298
Target:  5'- cGCgcgcGCCCgCGU-GGCC-GGGCUCGCGg -3'
miRNA:   3'- aUGa---UGGG-GUAgCUGGaCCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 77651 0.67 0.832298
Target:  5'- -cCUACCUCGUCGAgUgcaUGGuCUCGCu -3'
miRNA:   3'- auGAUGGGGUAGCUgG---ACCuGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 124448 0.67 0.823867
Target:  5'- gACgagaACCCCGUCGAggUGGACcUGCGc -3'
miRNA:   3'- aUGa---UGGGGUAGCUggACCUGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.