Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29390 | 5' | -56.5 | NC_006151.1 | + | 140395 | 0.73 | 0.509399 |
Target: 5'- gUGCUGCCCgAg-GACCUgggGGACUCGCc -3' miRNA: 3'- -AUGAUGGGgUagCUGGA---CCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 139563 | 0.72 | 0.538924 |
Target: 5'- aGCggcGCCCgGUCcgcgagcGCCUGGGCUCGCGc -3' miRNA: 3'- aUGa--UGGGgUAGc------UGGACCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 138946 | 0.66 | 0.885822 |
Target: 5'- aGCUACaCCAaguUCG-CCUGGuacauggccgaGCUCGCGa -3' miRNA: 3'- aUGAUGgGGU---AGCuGGACC-----------UGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 136343 | 0.77 | 0.312877 |
Target: 5'- ---aACCCCAgCGGCCUGGACccCGCGg -3' miRNA: 3'- augaUGGGGUaGCUGGACCUGa-GCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 132565 | 0.73 | 0.490098 |
Target: 5'- aGCUccuCCuCCA-CGGCCgGGACUCGCGg -3' miRNA: 3'- aUGAu--GG-GGUaGCUGGaCCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 124742 | 0.95 | 0.022884 |
Target: 5'- cACUACuaCCCAUCGACCUGGACUCGCGc -3' miRNA: 3'- aUGAUG--GGGUAGCUGGACCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 124448 | 0.67 | 0.823867 |
Target: 5'- gACgagaACCCCGUCGAggUGGACcUGCGc -3' miRNA: 3'- aUGa---UGGGGUAGCUggACCUGaGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 124036 | 0.7 | 0.647611 |
Target: 5'- ---gGCCCCcgacggcgaguacggCGACCUGGACgCGCGg -3' miRNA: 3'- augaUGGGGua-------------GCUGGACCUGaGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 120339 | 0.67 | 0.832298 |
Target: 5'- cGCgcgcGCCCgCGU-GGCC-GGGCUCGCGg -3' miRNA: 3'- aUGa---UGGG-GUAgCUGGaCCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 118102 | 0.66 | 0.856467 |
Target: 5'- cGCUGCgCCG-CGACCUGcuggcgcuGCUCGUGg -3' miRNA: 3'- aUGAUGgGGUaGCUGGACc-------UGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 117601 | 0.7 | 0.67111 |
Target: 5'- cGCcGCCgCAguaGACCgUGGGCUCGCGc -3' miRNA: 3'- aUGaUGGgGUag-CUGG-ACCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 115900 | 0.66 | 0.871575 |
Target: 5'- cGCU-CCCCGUUGACCUcGAaggCGCu -3' miRNA: 3'- aUGAuGGGGUAGCUGGAcCUga-GCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 114038 | 0.68 | 0.7699 |
Target: 5'- cGCUGCCCU-UCGACCUcGGcCagGCGg -3' miRNA: 3'- aUGAUGGGGuAGCUGGA-CCuGagCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 107063 | 0.66 | 0.878808 |
Target: 5'- -cCUGCCUCGU--GCUggUGGACUCGCa -3' miRNA: 3'- auGAUGGGGUAgcUGG--ACCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 106975 | 0.67 | 0.815261 |
Target: 5'- gACaACCCCAUCGagaacgcguGCCUGGcGC-CGCa -3' miRNA: 3'- aUGaUGGGGUAGC---------UGGACC-UGaGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 102049 | 0.8 | 0.213607 |
Target: 5'- aGCUgGCCCCGcUCGACCUGGGCcCGCu -3' miRNA: 3'- aUGA-UGGGGU-AGCUGGACCUGaGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 98060 | 0.75 | 0.374318 |
Target: 5'- ---aGCCCCGggcgcUCGGCCUgGGGCUCGCa -3' miRNA: 3'- augaUGGGGU-----AGCUGGA-CCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 91251 | 0.67 | 0.806488 |
Target: 5'- aGCcggGCCCCGUCG-CgaGGACgccCGCGu -3' miRNA: 3'- aUGa--UGGGGUAGCuGgaCCUGa--GCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 79395 | 0.67 | 0.815261 |
Target: 5'- ---gGCCCCGcgaUCGAUCUGGGCggaGCu -3' miRNA: 3'- augaUGGGGU---AGCUGGACCUGag-CGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 77651 | 0.67 | 0.832298 |
Target: 5'- -cCUACCUCGUCGAgUgcaUGGuCUCGCu -3' miRNA: 3'- auGAUGGGGUAGCUgG---ACCuGAGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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