Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29390 | 5' | -56.5 | NC_006151.1 | + | 51340 | 0.67 | 0.848606 |
Target: 5'- gGCU-CCCCGUccaCGGCCaGGAC-CGUGa -3' miRNA: 3'- aUGAuGGGGUA---GCUGGaCCUGaGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 6872 | 0.67 | 0.848606 |
Target: 5'- -cUUGCCCCAUCGACggccaaUGGGauuucuCUCGCc -3' miRNA: 3'- auGAUGGGGUAGCUGg-----ACCU------GAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 48940 | 0.67 | 0.847808 |
Target: 5'- gUGCUGCCCgCGcgcgaggacguguUCG-CCUGGACgCGCc -3' miRNA: 3'- -AUGAUGGG-GU-------------AGCuGGACCUGaGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 24345 | 0.67 | 0.840547 |
Target: 5'- gUGCaucuCCCCGUUGAUCgcGGGCUCGUc -3' miRNA: 3'- -AUGau--GGGGUAGCUGGa-CCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 120339 | 0.67 | 0.832298 |
Target: 5'- cGCgcgcGCCCgCGU-GGCC-GGGCUCGCGg -3' miRNA: 3'- aUGa---UGGG-GUAgCUGGaCCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 5557 | 0.68 | 0.788476 |
Target: 5'- gGCgGgCUCGUCGAgCagGGGCUCGCGg -3' miRNA: 3'- aUGaUgGGGUAGCUgGa-CCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 114038 | 0.68 | 0.7699 |
Target: 5'- cGCUGCCCU-UCGACCUcGGcCagGCGg -3' miRNA: 3'- aUGAUGGGGuAGCUGGA-CCuGagCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 13720 | 0.69 | 0.741136 |
Target: 5'- gGCUcCCCCAUUGGCCggucccGGACgcccguccCGCGg -3' miRNA: 3'- aUGAuGGGGUAGCUGGa-----CCUGa-------GCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 49156 | 0.69 | 0.721467 |
Target: 5'- gGCUGCCUgGa-GGCCUGGGCgcgcCGCGg -3' miRNA: 3'- aUGAUGGGgUagCUGGACCUGa---GCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 124036 | 0.7 | 0.647611 |
Target: 5'- ---gGCCCCcgacggcgaguacggCGACCUGGACgCGCGg -3' miRNA: 3'- augaUGGGGua-------------GCUGGACCUGaGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 117601 | 0.7 | 0.67111 |
Target: 5'- cGCcGCCgCAguaGACCgUGGGCUCGCGc -3' miRNA: 3'- aUGaUGGgGUag-CUGG-ACCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 24426 | 0.71 | 0.5893 |
Target: 5'- cGC-GCCCCAgacgUCGACCuUGGugUCGUa -3' miRNA: 3'- aUGaUGGGGU----AGCUGG-ACCugAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 139563 | 0.72 | 0.538924 |
Target: 5'- aGCggcGCCCgGUCcgcgagcGCCUGGGCUCGCGc -3' miRNA: 3'- aUGa--UGGGgUAGc------UGGACCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 140395 | 0.73 | 0.509399 |
Target: 5'- gUGCUGCCCgAg-GACCUgggGGACUCGCc -3' miRNA: 3'- -AUGAUGGGgUagCUGGA---CCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 132565 | 0.73 | 0.490098 |
Target: 5'- aGCUccuCCuCCA-CGGCCgGGACUCGCGg -3' miRNA: 3'- aUGAu--GG-GGUaGCUGGaCCUGAGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 98060 | 0.75 | 0.374318 |
Target: 5'- ---aGCCCCGggcgcUCGGCCUgGGGCUCGCa -3' miRNA: 3'- augaUGGGGU-----AGCUGGA-CCUGAGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 136343 | 0.77 | 0.312877 |
Target: 5'- ---aACCCCAgCGGCCUGGACccCGCGg -3' miRNA: 3'- augaUGGGGUaGCUGGACCUGa-GCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 102049 | 0.8 | 0.213607 |
Target: 5'- aGCUgGCCCCGcUCGACCUGGGCcCGCu -3' miRNA: 3'- aUGA-UGGGGU-AGCUGGACCUGaGCGc -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 45836 | 0.9 | 0.042983 |
Target: 5'- gACUGCCCCAUCuGCCUGGACgUCGCGg -3' miRNA: 3'- aUGAUGGGGUAGcUGGACCUG-AGCGC- -5' |
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29390 | 5' | -56.5 | NC_006151.1 | + | 124742 | 0.95 | 0.022884 |
Target: 5'- cACUACuaCCCAUCGACCUGGACUCGCGc -3' miRNA: 3'- aUGAUG--GGGUAGCUGGACCUGAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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