miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29390 5' -56.5 NC_006151.1 + 77651 0.67 0.832298
Target:  5'- -cCUACCUCGUCGAgUgcaUGGuCUCGCu -3'
miRNA:   3'- auGAUGGGGUAGCUgG---ACCuGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 79395 0.67 0.815261
Target:  5'- ---gGCCCCGcgaUCGAUCUGGGCggaGCu -3'
miRNA:   3'- augaUGGGGU---AGCUGGACCUGag-CGc -5'
29390 5' -56.5 NC_006151.1 + 91251 0.67 0.806488
Target:  5'- aGCcggGCCCCGUCG-CgaGGACgccCGCGu -3'
miRNA:   3'- aUGa--UGGGGUAGCuGgaCCUGa--GCGC- -5'
29390 5' -56.5 NC_006151.1 + 98060 0.75 0.374318
Target:  5'- ---aGCCCCGggcgcUCGGCCUgGGGCUCGCa -3'
miRNA:   3'- augaUGGGGU-----AGCUGGA-CCUGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 102049 0.8 0.213607
Target:  5'- aGCUgGCCCCGcUCGACCUGGGCcCGCu -3'
miRNA:   3'- aUGA-UGGGGU-AGCUGGACCUGaGCGc -5'
29390 5' -56.5 NC_006151.1 + 106975 0.67 0.815261
Target:  5'- gACaACCCCAUCGagaacgcguGCCUGGcGC-CGCa -3'
miRNA:   3'- aUGaUGGGGUAGC---------UGGACC-UGaGCGc -5'
29390 5' -56.5 NC_006151.1 + 107063 0.66 0.878808
Target:  5'- -cCUGCCUCGU--GCUggUGGACUCGCa -3'
miRNA:   3'- auGAUGGGGUAgcUGG--ACCUGAGCGc -5'
29390 5' -56.5 NC_006151.1 + 114038 0.68 0.7699
Target:  5'- cGCUGCCCU-UCGACCUcGGcCagGCGg -3'
miRNA:   3'- aUGAUGGGGuAGCUGGA-CCuGagCGC- -5'
29390 5' -56.5 NC_006151.1 + 115900 0.66 0.871575
Target:  5'- cGCU-CCCCGUUGACCUcGAaggCGCu -3'
miRNA:   3'- aUGAuGGGGUAGCUGGAcCUga-GCGc -5'
29390 5' -56.5 NC_006151.1 + 117601 0.7 0.67111
Target:  5'- cGCcGCCgCAguaGACCgUGGGCUCGCGc -3'
miRNA:   3'- aUGaUGGgGUag-CUGG-ACCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 118102 0.66 0.856467
Target:  5'- cGCUGCgCCG-CGACCUGcuggcgcuGCUCGUGg -3'
miRNA:   3'- aUGAUGgGGUaGCUGGACc-------UGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 120339 0.67 0.832298
Target:  5'- cGCgcgcGCCCgCGU-GGCC-GGGCUCGCGg -3'
miRNA:   3'- aUGa---UGGG-GUAgCUGGaCCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 124036 0.7 0.647611
Target:  5'- ---gGCCCCcgacggcgaguacggCGACCUGGACgCGCGg -3'
miRNA:   3'- augaUGGGGua-------------GCUGGACCUGaGCGC- -5'
29390 5' -56.5 NC_006151.1 + 124448 0.67 0.823867
Target:  5'- gACgagaACCCCGUCGAggUGGACcUGCGc -3'
miRNA:   3'- aUGa---UGGGGUAGCUggACCUGaGCGC- -5'
29390 5' -56.5 NC_006151.1 + 124742 0.95 0.022884
Target:  5'- cACUACuaCCCAUCGACCUGGACUCGCGc -3'
miRNA:   3'- aUGAUG--GGGUAGCUGGACCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 132565 0.73 0.490098
Target:  5'- aGCUccuCCuCCA-CGGCCgGGACUCGCGg -3'
miRNA:   3'- aUGAu--GG-GGUaGCUGGaCCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 136343 0.77 0.312877
Target:  5'- ---aACCCCAgCGGCCUGGACccCGCGg -3'
miRNA:   3'- augaUGGGGUaGCUGGACCUGa-GCGC- -5'
29390 5' -56.5 NC_006151.1 + 138946 0.66 0.885822
Target:  5'- aGCUACaCCAaguUCG-CCUGGuacauggccgaGCUCGCGa -3'
miRNA:   3'- aUGAUGgGGU---AGCuGGACC-----------UGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 139563 0.72 0.538924
Target:  5'- aGCggcGCCCgGUCcgcgagcGCCUGGGCUCGCGc -3'
miRNA:   3'- aUGa--UGGGgUAGc------UGGACCUGAGCGC- -5'
29390 5' -56.5 NC_006151.1 + 140395 0.73 0.509399
Target:  5'- gUGCUGCCCgAg-GACCUgggGGACUCGCc -3'
miRNA:   3'- -AUGAUGGGgUagCUGGA---CCUGAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.