miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 37839 0.71 0.615495
Target:  5'- -gGCCUACGCCGAcauggccuacccGggCcGCGCCGCGg -3'
miRNA:   3'- ugUGGAUGUGGUU------------CuaGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 38176 0.69 0.736639
Target:  5'- uCGCCcGCACCG----UGGCGCCGCu -3'
miRNA:   3'- uGUGGaUGUGGUucuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 38893 0.66 0.867935
Target:  5'- cCGCCUACugcccgcCCGAGGU-GGC-CCGCGc -3'
miRNA:   3'- uGUGGAUGu------GGUUCUAgCCGcGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39131 0.67 0.819762
Target:  5'- gGCGCCccGCGCCcggccuGGGAcCcGCGCCGCGg -3'
miRNA:   3'- -UGUGGa-UGUGG------UUCUaGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39221 0.68 0.765491
Target:  5'- cACGCCUGgGCCGGGAacuggaccgGGCGCCcCGa -3'
miRNA:   3'- -UGUGGAUgUGGUUCUag-------CCGCGGcGC- -5'
29391 3' -56.6 NC_006151.1 + 39464 0.67 0.83658
Target:  5'- uGCGCCgUGCGCUGGcccgGGUGCCGCGa -3'
miRNA:   3'- -UGUGG-AUGUGGUUcuagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39568 0.68 0.802263
Target:  5'- cCGCCUGCACCccGGGGcCGaGCcGCUGCGc -3'
miRNA:   3'- uGUGGAUGUGG--UUCUaGC-CG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39773 0.66 0.863438
Target:  5'- gGCGCCgccuucggGCACCGcgcggccaaccgcugGGGgcUCGGCGCCccgcuGCGg -3'
miRNA:   3'- -UGUGGa-------UGUGGU---------------UCU--AGCCGCGG-----CGC- -5'
29391 3' -56.6 NC_006151.1 + 39884 0.7 0.646164
Target:  5'- -gGCCUGCcgGCCGAGuugcgcgccuUCuGCGCCGCGg -3'
miRNA:   3'- ugUGGAUG--UGGUUCu---------AGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 40036 0.72 0.554685
Target:  5'- cGCGCCgcCGCCGGG---GGCGCCGUGg -3'
miRNA:   3'- -UGUGGauGUGGUUCuagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 40080 0.66 0.889254
Target:  5'- -gGCCUcggGCGCCGGGGcCGGCcCCgGCGa -3'
miRNA:   3'- ugUGGA---UGUGGUUCUaGCCGcGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 43198 0.77 0.310278
Target:  5'- cCGCCUGCACCcGGuucCGGCGCUGCc -3'
miRNA:   3'- uGUGGAUGUGGuUCua-GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 46734 0.68 0.764545
Target:  5'- -gGCCgGC-CCGGGGUCGGCgaacaccGCCGCu -3'
miRNA:   3'- ugUGGaUGuGGUUCUAGCCG-------CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 48894 0.71 0.615495
Target:  5'- cGCGCCUGCgcugGCCGAGuaccgCGGCcGCUGCc -3'
miRNA:   3'- -UGUGGAUG----UGGUUCua---GCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 49982 0.83 0.137947
Target:  5'- uCGCCUGCACCAAGAcguccgcguUUGcGCGCCGCGc -3'
miRNA:   3'- uGUGGAUGUGGUUCU---------AGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 50156 0.67 0.844714
Target:  5'- cGCGCCcgACGagcggaCGAGcgCGGCcgGCCGCGc -3'
miRNA:   3'- -UGUGGa-UGUg-----GUUCuaGCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 50228 0.69 0.696941
Target:  5'- uGCGgCUGCACCGGGAcaacguguuugCGGCGCCa-- -3'
miRNA:   3'- -UGUgGAUGUGGUUCUa----------GCCGCGGcgc -5'
29391 3' -56.6 NC_006151.1 + 51416 0.66 0.878129
Target:  5'- aGCGCgUGCACCcguccguggccauGAcgCGGaCGCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGuu-----------CUa-GCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 52016 0.71 0.635941
Target:  5'- uGCGCC-GCGCCAgcuccucggcgaAGGcCGGCGCCGUc -3'
miRNA:   3'- -UGUGGaUGUGGU------------UCUaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 52132 0.67 0.847914
Target:  5'- aACACCUcgcacccgcGCACCGAGAcgcuguccacgugcgUCucgaagGGCGCgCGCGc -3'
miRNA:   3'- -UGUGGA---------UGUGGUUCU---------------AG------CCGCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.