miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 19043 0.66 0.87526
Target:  5'- cACGCCgggucCACCGGGcgCaggcacucgGGCGCgCGCGg -3'
miRNA:   3'- -UGUGGau---GUGGUUCuaG---------CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 19886 0.66 0.860398
Target:  5'- aGCGCCagggccagcaGCGCCAGGAgcugcgCGGCGCgcaGCa -3'
miRNA:   3'- -UGUGGa---------UGUGGUUCUa-----GCCGCGg--CGc -5'
29391 3' -56.6 NC_006151.1 + 20114 0.67 0.83658
Target:  5'- gGCGCCccgGCgacgggGCUggGGggcgGGCGCCGCGg -3'
miRNA:   3'- -UGUGGa--UG------UGGuuCUag--CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 20756 0.68 0.793278
Target:  5'- cGCGCCUcCACCGcggcGGA-CGcGCGCCGgGc -3'
miRNA:   3'- -UGUGGAuGUGGU----UCUaGC-CGCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 20986 0.72 0.564725
Target:  5'- uCGCCggGCACgAGGA-CGGCGCUGCc -3'
miRNA:   3'- uGUGGa-UGUGgUUCUaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 21319 0.66 0.889254
Target:  5'- gGCGCgagACGCCcGGcgCGGCGgggguCCGCGg -3'
miRNA:   3'- -UGUGga-UGUGGuUCuaGCCGC-----GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 22134 0.66 0.882368
Target:  5'- cCACCUGCGgguCgGAGAUCaGCGCCa-- -3'
miRNA:   3'- uGUGGAUGU---GgUUCUAGcCGCGGcgc -5'
29391 3' -56.6 NC_006151.1 + 24940 0.68 0.793278
Target:  5'- aGCACCUcgaACCcAGGUCcgugacgauGcGCGCCGCGg -3'
miRNA:   3'- -UGUGGAug-UGGuUCUAG---------C-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 26342 0.66 0.882368
Target:  5'- cCGCCU-CACgGGGcggCGGCggGCCGCGu -3'
miRNA:   3'- uGUGGAuGUGgUUCua-GCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 27173 0.69 0.702965
Target:  5'- gGCGCCgcgugucgggGCGCCAGGGggccgcgcagaaGGCGCCGgGg -3'
miRNA:   3'- -UGUGGa---------UGUGGUUCUag----------CCGCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 29038 0.73 0.515117
Target:  5'- aACGCUgGCagcguGCCAAGAcucgaguuggCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGaUG-----UGGUUCUa---------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 29409 0.66 0.889254
Target:  5'- -gACC-GCGCgGAGAaggcUCGGUgugGCCGCGg -3'
miRNA:   3'- ugUGGaUGUGgUUCU----AGCCG---CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 31298 0.72 0.577845
Target:  5'- cCACCcACACCGuaaacucucacacGGAcacgcgcgcccacccUCGGCGCCGUGg -3'
miRNA:   3'- uGUGGaUGUGGU-------------UCU---------------AGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 31741 0.7 0.666567
Target:  5'- gGCGCCcGCGCCGGGGaC-GCGCCuGCGg -3'
miRNA:   3'- -UGUGGaUGUGGUUCUaGcCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 35110 0.67 0.814581
Target:  5'- cGCGCCcGCGCgAGGGauuuUCGgacaaucucauuggcGCGCCGCGg -3'
miRNA:   3'- -UGUGGaUGUGgUUCU----AGC---------------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 35217 0.69 0.746359
Target:  5'- cGCGCCcAUuggcccgggcgaGCCGAGAU-GGcCGCCGCGg -3'
miRNA:   3'- -UGUGGaUG------------UGGUUCUAgCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 35770 0.68 0.793278
Target:  5'- gACGCCcgaccCACCGAGGcucUCGGC-CCGCc -3'
miRNA:   3'- -UGUGGau---GUGGUUCU---AGCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 36017 0.72 0.574811
Target:  5'- gACGgCgGCAgCCAGGGcuccCGGCGCCGCGg -3'
miRNA:   3'- -UGUgGaUGU-GGUUCUa---GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 36615 0.66 0.882368
Target:  5'- cCGCCgccGgGCCGGucUCGGCGCCcgGCGg -3'
miRNA:   3'- uGUGGa--UgUGGUUcuAGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 36883 0.67 0.82826
Target:  5'- gGCGCCccCGCaGAGAcagccccgcCGGCGCCGCGc -3'
miRNA:   3'- -UGUGGauGUGgUUCUa--------GCCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.