miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 1833 0.66 0.882368
Target:  5'- aGCGCCgccGgGCCGAGGggaccgaGGCcgccGCCGCGg -3'
miRNA:   3'- -UGUGGa--UgUGGUUCUag-----CCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 2086 0.66 0.87526
Target:  5'- -gGCCUcCACCuuGAUgGGCccgagcggGCCGCGg -3'
miRNA:   3'- ugUGGAuGUGGuuCUAgCCG--------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 2453 0.66 0.882368
Target:  5'- cGCAgCgggGCGCCGAGcccccagCGGUugGCCGCGc -3'
miRNA:   3'- -UGUgGa--UGUGGUUCua-----GCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 2959 0.66 0.852656
Target:  5'- gGCGCCggcgaaGCCGAGGUCccGCGCCGa- -3'
miRNA:   3'- -UGUGGaug---UGGUUCUAGc-CGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 3090 0.67 0.83658
Target:  5'- gGCGgCgagcaGCGCCGAGA--GGcCGCCGCGg -3'
miRNA:   3'- -UGUgGa----UGUGGUUCUagCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 3196 0.66 0.87526
Target:  5'- aGCACCaccACGCgcacguccuCGGGGUCGGCuaucuGCCGCa -3'
miRNA:   3'- -UGUGGa--UGUG---------GUUCUAGCCG-----CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 3578 0.71 0.583924
Target:  5'- gGCGCUUGCGCCGGGGcccccgguccucuUCGuCGUCGCGg -3'
miRNA:   3'- -UGUGGAUGUGGUUCU-------------AGCcGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 4277 0.67 0.811093
Target:  5'- gACGCCgcgGCagGCCAGGAcgcaGGCGuCCGCc -3'
miRNA:   3'- -UGUGGa--UG--UGGUUCUag--CCGC-GGCGc -5'
29391 3' -56.6 NC_006151.1 + 4384 0.66 0.860398
Target:  5'- uCGCCUccccgGCGCgGGGGUCcGCGgCGCGg -3'
miRNA:   3'- uGUGGA-----UGUGgUUCUAGcCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 5636 0.72 0.574811
Target:  5'- cCGCCggGCGCCGAGAcCGGCccgGCgGCGg -3'
miRNA:   3'- uGUGGa-UGUGGUUCUaGCCG---CGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 5713 0.67 0.827418
Target:  5'- cGCugCUggcugugcuggugGCGCCGGGGUCcgaggccGCGCCGCc -3'
miRNA:   3'- -UGugGA-------------UGUGGUUCUAGc------CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 5902 0.71 0.635941
Target:  5'- cGCugCgagUGCuGCCGGGGUCGGCGgCCGgGg -3'
miRNA:   3'- -UGugG---AUG-UGGUUCUAGCCGC-GGCgC- -5'
29391 3' -56.6 NC_006151.1 + 6230 0.69 0.716935
Target:  5'- -aGCCgcgGCGCCGGGAgcccUGGCuGCCGCc -3'
miRNA:   3'- ugUGGa--UGUGGUUCUa---GCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 7645 0.67 0.82826
Target:  5'- cCACCcGCGCCucgcGcUCGGCGCgCGCu -3'
miRNA:   3'- uGUGGaUGUGGuu--CuAGCCGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 8260 0.67 0.827418
Target:  5'- cGCGCCgggACGCCccuccgggggaaaGAGuGUCcccgcgcgGGCGCCGCGu -3'
miRNA:   3'- -UGUGGa--UGUGG-------------UUC-UAG--------CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 10926 0.67 0.83658
Target:  5'- -gGCCcacgGCGCCgAGGGUgGGCGCgCGUGu -3'
miRNA:   3'- ugUGGa---UGUGG-UUCUAgCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 11681 0.69 0.696941
Target:  5'- --cCCUGCGCCc-GA-CGGgGCCGCGg -3'
miRNA:   3'- uguGGAUGUGGuuCUaGCCgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 17098 0.72 0.52491
Target:  5'- cGCGCCcgucgggGCGCCGGGGgcuccggcggCGGUGCUGCGg -3'
miRNA:   3'- -UGUGGa------UGUGGUUCUa---------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 17153 0.74 0.430864
Target:  5'- aGCACCUGguCGCaGAGGUCGGCGgCGCc -3'
miRNA:   3'- -UGUGGAU--GUGgUUCUAGCCGCgGCGc -5'
29391 3' -56.6 NC_006151.1 + 17313 0.71 0.625716
Target:  5'- -aGCCgucCGCCGGGG--GGCGCCGCGu -3'
miRNA:   3'- ugUGGau-GUGGUUCUagCCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.