miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 141605 0.68 0.755979
Target:  5'- cCGCCcgGCgaggcuGCCGGGAUCGGgcgggucgcUGCCGCGg -3'
miRNA:   3'- uGUGGa-UG------UGGUUCUAGCC---------GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 141237 0.68 0.805814
Target:  5'- gACGgCUGCACCAcggagggcgaggAGAuccagucgcggggccUCGGCGgCUGCGg -3'
miRNA:   3'- -UGUgGAUGUGGU------------UCU---------------AGCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 140303 0.68 0.784149
Target:  5'- gGCGCCgcCugCGGGA-CGuGCGCUGCa -3'
miRNA:   3'- -UGUGGauGugGUUCUaGC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 140230 0.67 0.844714
Target:  5'- -aACCUGCGCCugAAGcUCGG-GCCGUu -3'
miRNA:   3'- ugUGGAUGUGG--UUCuAGCCgCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 140054 0.68 0.784149
Target:  5'- cGCACgc-CACCGAGG-CGGCGCgCGUGc -3'
miRNA:   3'- -UGUGgauGUGGUUCUaGCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 139641 0.73 0.515117
Target:  5'- gGCGCCgGCGCgGGGGUCGcggcgggcGCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGgUUCUAGC--------CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 138959 0.66 0.87526
Target:  5'- uCGCCUgguACaugGCCGAGcUCGcgacGCGCCGCGc -3'
miRNA:   3'- uGUGGA---UG---UGGUUCuAGC----CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 138816 0.68 0.778606
Target:  5'- -gGCCUucguguacgcGCGCCAGGAgCGGCGCauguuuggccccuucCGCGa -3'
miRNA:   3'- ugUGGA----------UGUGGUUCUaGCCGCG---------------GCGC- -5'
29391 3' -56.6 NC_006151.1 + 138712 0.7 0.665549
Target:  5'- gGCGCUgcGCGCCGcgcgcGGGUCGuguacgcGCGCCGCGa -3'
miRNA:   3'- -UGUGGa-UGUGGU-----UCUAGC-------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137686 0.74 0.467367
Target:  5'- gGCugCcGCGCCAAGAUgGGCuuCCGCGu -3'
miRNA:   3'- -UGugGaUGUGGUUCUAgCCGc-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137575 0.66 0.882368
Target:  5'- uACACgUGCGacgacgaCGAGGUCGGgGUCGgGa -3'
miRNA:   3'- -UGUGgAUGUg------GUUCUAGCCgCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 137494 0.76 0.347441
Target:  5'- gACGCCgcccuCGCCGAcuUUGGCGCCGCGc -3'
miRNA:   3'- -UGUGGau---GUGGUUcuAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137398 0.71 0.634919
Target:  5'- aGCGCCUGCccGCCGGGGggcgcccUCGccgcCGCCGCGg -3'
miRNA:   3'- -UGUGGAUG--UGGUUCU-------AGCc---GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137116 0.67 0.83658
Target:  5'- gACGCCUggggGCGCgCGacGGcgCGGCGCgaCGCGg -3'
miRNA:   3'- -UGUGGA----UGUG-GU--UCuaGCCGCG--GCGC- -5'
29391 3' -56.6 NC_006151.1 + 137081 0.69 0.716935
Target:  5'- cGCACCgGCGCCAGGccuucgCGGUGCUGg- -3'
miRNA:   3'- -UGUGGaUGUGGUUCua----GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 136982 0.66 0.87526
Target:  5'- cCGCC-GCGCCGGGcggCgGGCGCgCGCGc -3'
miRNA:   3'- uGUGGaUGUGGUUCua-G-CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 136937 0.67 0.819762
Target:  5'- -aGCCggGCGCCGA---CGGCGCCGUc -3'
miRNA:   3'- ugUGGa-UGUGGUUcuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 136798 0.69 0.736639
Target:  5'- cGCACgUACGCCGcGcUCGcggccgacGCGCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGUuCuAGC--------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 136608 0.69 0.726827
Target:  5'- aGCACCUggACGCCGucaacgucacGGAccccgCGGCGcCCGUGg -3'
miRNA:   3'- -UGUGGA--UGUGGU----------UCUa----GCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 136469 0.72 0.534772
Target:  5'- cGCGCCgaccGCGCCGAGAUgGGCGUCcucCGg -3'
miRNA:   3'- -UGUGGa---UGUGGUUCUAgCCGCGGc--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.