miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 124526 1.09 0.002292
Target:  5'- gACACCUACACCAAGAUCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGAUGUGGUUCUAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 49982 0.83 0.137947
Target:  5'- uCGCCUGCACCAAGAcguccgcguUUGcGCGCCGCGc -3'
miRNA:   3'- uGUGGAUGUGGUUCU---------AGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104252 0.81 0.169232
Target:  5'- cGCACCUGC-CCGAGAacgcCGGCGCgGCGg -3'
miRNA:   3'- -UGUGGAUGuGGUUCUa---GCCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 64590 0.81 0.186216
Target:  5'- uGCACgUACGCCAGGcgguacgccagCGGCGCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGUUCua---------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 85139 0.81 0.18715
Target:  5'- uGCACCUgguGCACCGcgugcggcaggGGGcCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGA---UGUGGU-----------UCUaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 70876 0.8 0.206719
Target:  5'- gGCGCCUcCGCCGacgAGAUCGcGCGCUGCGu -3'
miRNA:   3'- -UGUGGAuGUGGU---UCUAGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 119035 0.79 0.233643
Target:  5'- -gGCggGCGCCAAGGacggCGGCGCCGCGg -3'
miRNA:   3'- ugUGgaUGUGGUUCUa---GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 113096 0.79 0.23937
Target:  5'- cCGCCgcCACCGGGggCGGgGCCGCGg -3'
miRNA:   3'- uGUGGauGUGGUUCuaGCCgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 67279 0.78 0.251175
Target:  5'- cGCGCCUGCGCCGc---UGGUGCCGCGa -3'
miRNA:   3'- -UGUGGAUGUGGUucuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104693 0.78 0.251175
Target:  5'- uGCACCUgcacgugccgaGCACCGAGcugcugcgCGGCGCCGUGa -3'
miRNA:   3'- -UGUGGA-----------UGUGGUUCua------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 122935 0.78 0.263455
Target:  5'- gACGCggACGCCGAcGG-CGGCGCCGCGg -3'
miRNA:   3'- -UGUGgaUGUGGUU-CUaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 56378 0.77 0.296283
Target:  5'- gGCGCCUGCugCAc-GUCGGCGCCacGCGc -3'
miRNA:   3'- -UGUGGAUGugGUucUAGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 96863 0.77 0.303219
Target:  5'- cGCGCC--CGCCGGGcgCGGCGCgCGCGg -3'
miRNA:   3'- -UGUGGauGUGGUUCuaGCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 43198 0.77 0.310278
Target:  5'- cCGCCUGCACCcGGuucCGGCGCUGCc -3'
miRNA:   3'- uGUGGAUGUGGuUCua-GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 68219 0.76 0.332203
Target:  5'- gGC-CCUGCGCCAGGcgCaGCGCcCGCGg -3'
miRNA:   3'- -UGuGGAUGUGGUUCuaGcCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 137494 0.76 0.347441
Target:  5'- gACGCCgcccuCGCCGAcuUUGGCGCCGCGc -3'
miRNA:   3'- -UGUGGau---GUGGUUcuAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 57058 0.76 0.363173
Target:  5'- aGCugCUcguaggGCACCGGGc-CGGCGCCGCGc -3'
miRNA:   3'- -UGugGA------UGUGGUUCuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 122670 0.75 0.371221
Target:  5'- aGCGCC-GCGCCGAGGUgcgcgCGGCGgCCGUGg -3'
miRNA:   3'- -UGUGGaUGUGGUUCUA-----GCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 99075 0.75 0.379391
Target:  5'- uGCGCCcggGCACCGuGGcgCGGCGCCuGCGc -3'
miRNA:   3'- -UGUGGa--UGUGGU-UCuaGCCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 55453 0.74 0.422002
Target:  5'- gGCGCCgccggcccCGCCGGGGggcgcgcgccCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGau------GUGGUUCUa---------GCCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.