miRNA display CGI


Results 21 - 40 of 278 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 130296 0.74 0.422002
Target:  5'- cGCGCCggccgacgGCGCgGAGcgCGcGCGCCGCGc -3'
miRNA:   3'- -UGUGGa-------UGUGgUUCuaGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 17153 0.74 0.430864
Target:  5'- aGCACCUGguCGCaGAGGUCGGCGgCGCc -3'
miRNA:   3'- -UGUGGAU--GUGgUUCUAGCCGCgGCGc -5'
29391 3' -56.6 NC_006151.1 + 90222 0.74 0.430864
Target:  5'- gACGCCg--GCCGAGAUC-GCGUCGCGg -3'
miRNA:   3'- -UGUGGaugUGGUUCUAGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 67862 0.74 0.458089
Target:  5'- -aGCCgGCGCCGAGGU-GGCGCgCGCGc -3'
miRNA:   3'- ugUGGaUGUGGUUCUAgCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 86231 0.74 0.458089
Target:  5'- cCGCCcGCGCUgcGAcaUCGGCGCCGUGc -3'
miRNA:   3'- uGUGGaUGUGGuuCU--AGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 118140 0.74 0.467367
Target:  5'- aGCGCCgacgACGCCGcGGcggUGGCGCCGCu -3'
miRNA:   3'- -UGUGGa---UGUGGUuCUa--GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 137686 0.74 0.467367
Target:  5'- gGCugCcGCGCCAAGAUgGGCuuCCGCGu -3'
miRNA:   3'- -UGugGaUGUGGUUCUAgCCGc-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 77974 0.73 0.47674
Target:  5'- cGCGCCggUACGCCGAGcgC-GCGCUGCGc -3'
miRNA:   3'- -UGUGG--AUGUGGUUCuaGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 55860 0.73 0.495761
Target:  5'- -gGCCUACcugACCGAGAUcgCGGCGCUGUc -3'
miRNA:   3'- ugUGGAUG---UGGUUCUA--GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 127850 0.73 0.495761
Target:  5'- cGCGgCUGCGCCgGAGGg-GGCGCCGCc -3'
miRNA:   3'- -UGUgGAUGUGG-UUCUagCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 76870 0.73 0.505399
Target:  5'- cGCGCCgcCGCCAGGAgcccCaGCGCCGCc -3'
miRNA:   3'- -UGUGGauGUGGUUCUa---GcCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 117316 0.73 0.515117
Target:  5'- uCGCC-ACGCCGAGggCGGCGUCGg- -3'
miRNA:   3'- uGUGGaUGUGGUUCuaGCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 101425 0.73 0.515117
Target:  5'- cGCGCCgaguccuucACGCUGGucguGGUCGGCGCCGUGg -3'
miRNA:   3'- -UGUGGa--------UGUGGUU----CUAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 139641 0.73 0.515117
Target:  5'- gGCGCCgGCGCgGGGGUCGcggcgggcGCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGgUUCUAGC--------CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 91671 0.73 0.515117
Target:  5'- uCACCUGCGCCGGG--UGGUGCgCGUGg -3'
miRNA:   3'- uGUGGAUGUGGUUCuaGCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 96190 0.73 0.515117
Target:  5'- aGCACgaGCGCCAuGG--GGCGCCGCGu -3'
miRNA:   3'- -UGUGgaUGUGGUuCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 29038 0.73 0.515117
Target:  5'- aACGCUgGCagcguGCCAAGAcucgaguuggCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGaUG-----UGGUUCUa---------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89534 0.72 0.52491
Target:  5'- cCGCCUcgagcaGCGCCGAGGcCGGUggagGCCGCGa -3'
miRNA:   3'- uGUGGA------UGUGGUUCUaGCCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 87593 0.72 0.52491
Target:  5'- gGCACCaucgACGCC-AGcUCGGcCGCCGUGg -3'
miRNA:   3'- -UGUGGa---UGUGGuUCuAGCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 17098 0.72 0.52491
Target:  5'- cGCGCCcgucgggGCGCCGGGGgcuccggcggCGGUGCUGCGg -3'
miRNA:   3'- -UGUGGa------UGUGGUUCUa---------GCCGCGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.