miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 1833 0.66 0.882368
Target:  5'- aGCGCCgccGgGCCGAGGggaccgaGGCcgccGCCGCGg -3'
miRNA:   3'- -UGUGGa--UgUGGUUCUag-----CCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 26342 0.66 0.882368
Target:  5'- cCGCCU-CACgGGGcggCGGCggGCCGCGu -3'
miRNA:   3'- uGUGGAuGUGgUUCua-GCCG--CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 61990 0.66 0.882368
Target:  5'- cACGCCUGCAagggcaCGGGugacgUGcGCGCCGCc -3'
miRNA:   3'- -UGUGGAUGUg-----GUUCua---GC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 68171 0.66 0.882368
Target:  5'- cCACCaGCGCguAGG-CGGCGUCGUu -3'
miRNA:   3'- uGUGGaUGUGguUCUaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 111436 0.66 0.882368
Target:  5'- cGCAUCUcgGCGcgguCCAGGA--GGCGCUGCGu -3'
miRNA:   3'- -UGUGGA--UGU----GGUUCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 118088 0.66 0.882368
Target:  5'- gACGCCg--AUCGAGGcgCuGCGCCGCGa -3'
miRNA:   3'- -UGUGGaugUGGUUCUa-GcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137575 0.66 0.882368
Target:  5'- uACACgUGCGacgacgaCGAGGUCGGgGUCGgGa -3'
miRNA:   3'- -UGUGgAUGUg------GUUCUAGCCgCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 36615 0.66 0.882368
Target:  5'- cCGCCgccGgGCCGGucUCGGCGCCcgGCGg -3'
miRNA:   3'- uGUGGa--UgUGGUUcuAGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 102763 0.66 0.882368
Target:  5'- cGCGCaagcugGCGCUGAuGGUCGGCGacgccuCCGCGa -3'
miRNA:   3'- -UGUGga----UGUGGUU-CUAGCCGC------GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104045 0.66 0.880259
Target:  5'- aGCGCCaGCucugggcgcgcgcgGCCGAcg-CGGCGCUGCGc -3'
miRNA:   3'- -UGUGGaUG--------------UGGUUcuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 98403 0.66 0.878129
Target:  5'- cGCGCCUACGUCGAGAcgggcaccugcgaGGCGgCCGUGc -3'
miRNA:   3'- -UGUGGAUGUGGUUCUag-----------CCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 51416 0.66 0.878129
Target:  5'- aGCGCgUGCACCcguccguggccauGAcgCGGaCGCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGuu-----------CUa-GCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 60604 0.66 0.87526
Target:  5'- cCGCCUcCACCGccGUCGuCGCCGCc -3'
miRNA:   3'- uGUGGAuGUGGUucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 69470 0.66 0.87526
Target:  5'- gGCGCCgGCACC---GUCGcCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGGuucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 69611 0.66 0.87526
Target:  5'- cGCACCaGCGaCAGGAucucgcggUCGGCGucCCGCGc -3'
miRNA:   3'- -UGUGGaUGUgGUUCU--------AGCCGC--GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 72745 0.66 0.87526
Target:  5'- cGCAgCaGCGCCGAGucgcUGGCGCacaGCGg -3'
miRNA:   3'- -UGUgGaUGUGGUUCua--GCCGCGg--CGC- -5'
29391 3' -56.6 NC_006151.1 + 111581 0.66 0.87526
Target:  5'- cGCGCUUgaugucgucgaGCGCCGAGAggcucaugcCGGUGCUGUGc -3'
miRNA:   3'- -UGUGGA-----------UGUGGUUCUa--------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 135366 0.66 0.87526
Target:  5'- cGCGCgUugGCCg----CGuGCGCCGCGa -3'
miRNA:   3'- -UGUGgAugUGGuucuaGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 136982 0.66 0.87526
Target:  5'- cCGCC-GCGCCGGGcggCgGGCGCgCGCGc -3'
miRNA:   3'- uGUGGaUGUGGUUCua-G-CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 3196 0.66 0.87526
Target:  5'- aGCACCaccACGCgcacguccuCGGGGUCGGCuaucuGCCGCa -3'
miRNA:   3'- -UGUGGa--UGUG---------GUUCUAGCCG-----CGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.