miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 69470 0.66 0.87526
Target:  5'- gGCGCCgGCACC---GUCGcCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGGuucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 138959 0.66 0.87526
Target:  5'- uCGCCUgguACaugGCCGAGcUCGcgacGCGCCGCGc -3'
miRNA:   3'- uGUGGA---UG---UGGUUCuAGC----CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 136982 0.66 0.87526
Target:  5'- cCGCC-GCGCCGGGcggCgGGCGCgCGCGc -3'
miRNA:   3'- uGUGGaUGUGGUUCua-G-CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 135366 0.66 0.87526
Target:  5'- cGCGCgUugGCCg----CGuGCGCCGCGa -3'
miRNA:   3'- -UGUGgAugUGGuucuaGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 111581 0.66 0.87526
Target:  5'- cGCGCUUgaugucgucgaGCGCCGAGAggcucaugcCGGUGCUGUGc -3'
miRNA:   3'- -UGUGGA-----------UGUGGUUCUa--------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 72745 0.66 0.87526
Target:  5'- cGCAgCaGCGCCGAGucgcUGGCGCacaGCGg -3'
miRNA:   3'- -UGUgGaUGUGGUUCua--GCCGCGg--CGC- -5'
29391 3' -56.6 NC_006151.1 + 69611 0.66 0.87526
Target:  5'- cGCACCaGCGaCAGGAucucgcggUCGGCGucCCGCGc -3'
miRNA:   3'- -UGUGGaUGUgGUUCU--------AGCCGC--GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 84802 0.66 0.874537
Target:  5'- gGCGCCcgagGCgACCGcggccgcGGA-CGGgGCCGCGa -3'
miRNA:   3'- -UGUGGa---UG-UGGU-------UCUaGCCgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 58566 0.66 0.867935
Target:  5'- uCGCCgcCGCCGcccgcCGGCGUCGCGg -3'
miRNA:   3'- uGUGGauGUGGUucua-GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 73107 0.66 0.867935
Target:  5'- uGCACCU-CGCCGg---CGGCGCgcccgCGCGg -3'
miRNA:   3'- -UGUGGAuGUGGUucuaGCCGCG-----GCGC- -5'
29391 3' -56.6 NC_006151.1 + 85531 0.66 0.867935
Target:  5'- -gGCCUGCugCugcugCGGCGCCuGCu -3'
miRNA:   3'- ugUGGAUGugGuucuaGCCGCGG-CGc -5'
29391 3' -56.6 NC_006151.1 + 38893 0.66 0.867935
Target:  5'- cCGCCUACugcccgcCCGAGGU-GGC-CCGCGc -3'
miRNA:   3'- uGUGGAUGu------GGUUCUAgCCGcGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89259 0.66 0.867935
Target:  5'- aGCGCCgu--CguGGucgaCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGauguGguUCua--GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 120807 0.66 0.867935
Target:  5'- cGCGCC-GCGCgCGAGGUgcuggacGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGUG-GUUCUAgc-----CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 65458 0.66 0.867191
Target:  5'- gGCGCagcgGCGCCGAGAgucccaucaGGCgcaccacGCCGCGg -3'
miRNA:   3'- -UGUGga--UGUGGUUCUag-------CCG-------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39773 0.66 0.863438
Target:  5'- gGCGCCgccuucggGCACCGcgcggccaaccgcugGGGgcUCGGCGCCccgcuGCGg -3'
miRNA:   3'- -UGUGGa-------UGUGGU---------------UCU--AGCCGCGG-----CGC- -5'
29391 3' -56.6 NC_006151.1 + 64626 0.66 0.860398
Target:  5'- cCGCCggcCGCgGGGcgCGGCGCCccGCGc -3'
miRNA:   3'- uGUGGau-GUGgUUCuaGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 66513 0.66 0.860398
Target:  5'- -gAUCUuCGCCGGGcUCGcgcGCGCCGCGc -3'
miRNA:   3'- ugUGGAuGUGGUUCuAGC---CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 19886 0.66 0.860398
Target:  5'- aGCGCCagggccagcaGCGCCAGGAgcugcgCGGCGCgcaGCa -3'
miRNA:   3'- -UGUGGa---------UGUGGUUCUa-----GCCGCGg--CGc -5'
29391 3' -56.6 NC_006151.1 + 4384 0.66 0.860398
Target:  5'- uCGCCUccccgGCGCgGGGGUCcGCGgCGCGg -3'
miRNA:   3'- uGUGGA-----UGUGgUUCUAGcCGCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.