miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 5' -56.8 NC_006151.1 + 124561 1.05 0.00375
Target:  5'- cCACACGGGCACCUCCGUCAACUGCAUc -3'
miRNA:   3'- -GUGUGCCCGUGGAGGCAGUUGACGUA- -5'
29391 5' -56.8 NC_006151.1 + 70871 0.78 0.242185
Target:  5'- -uCACGGGCGCCUCCGcCGacgagaucgcgcGCUGCGUc -3'
miRNA:   3'- guGUGCCCGUGGAGGCaGU------------UGACGUA- -5'
29391 5' -56.8 NC_006151.1 + 54959 0.75 0.36061
Target:  5'- aGCACGcGCGCCUCUGcCAGCUGCu- -3'
miRNA:   3'- gUGUGCcCGUGGAGGCaGUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 130418 0.75 0.368712
Target:  5'- aGCGCGGGCgcGCCgaCCGUCGaggACUGCAg -3'
miRNA:   3'- gUGUGCCCG--UGGa-GGCAGU---UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 86579 0.75 0.376938
Target:  5'- gGCGCGGGCGCgCUCCG--AGCUGCu- -3'
miRNA:   3'- gUGUGCCCGUG-GAGGCagUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 122273 0.74 0.402346
Target:  5'- aCGCACaGGCGCCUgC-UCGGCUGCGUg -3'
miRNA:   3'- -GUGUGcCCGUGGAgGcAGUUGACGUA- -5'
29391 5' -56.8 NC_006151.1 + 123270 0.72 0.48467
Target:  5'- gCGCGCGGGCACCgUCGUgGACgaGCGc -3'
miRNA:   3'- -GUGUGCCCGUGGaGGCAgUUGa-CGUa -5'
29391 5' -56.8 NC_006151.1 + 92755 0.72 0.48467
Target:  5'- gGCACGGGCACCUgagCGU--GCUGCGg -3'
miRNA:   3'- gUGUGCCCGUGGAg--GCAguUGACGUa -5'
29391 5' -56.8 NC_006151.1 + 119435 0.72 0.494319
Target:  5'- gACGCGGGCACgUUCGUgGGCcGCGg -3'
miRNA:   3'- gUGUGCCCGUGgAGGCAgUUGaCGUa -5'
29391 5' -56.8 NC_006151.1 + 72033 0.72 0.504056
Target:  5'- cCGCGCGGGCGCCccgCCGcgCAGCgucucgGCGg -3'
miRNA:   3'- -GUGUGCCCGUGGa--GGCa-GUUGa-----CGUa -5'
29391 5' -56.8 NC_006151.1 + 131783 0.72 0.513874
Target:  5'- -cCGCGGGCGCCgccgUCGUCAGC-GCGc -3'
miRNA:   3'- guGUGCCCGUGGa---GGCAGUUGaCGUa -5'
29391 5' -56.8 NC_006151.1 + 49458 0.72 0.513874
Target:  5'- cCAgACGGGCcggGCCcCCGUCGACUGgAg -3'
miRNA:   3'- -GUgUGCCCG---UGGaGGCAGUUGACgUa -5'
29391 5' -56.8 NC_006151.1 + 109138 0.71 0.53975
Target:  5'- gGC-CGGGCACCUCCGUCuccacaucccgccGCcGCAg -3'
miRNA:   3'- gUGuGCCCGUGGAGGCAGu------------UGaCGUa -5'
29391 5' -56.8 NC_006151.1 + 97271 0.71 0.564017
Target:  5'- cCACACGGGCagcGCCUCgG-CGGCggGCGUg -3'
miRNA:   3'- -GUGUGCCCG---UGGAGgCaGUUGa-CGUA- -5'
29391 5' -56.8 NC_006151.1 + 126076 0.7 0.625697
Target:  5'- -cCACGGGgGCCgugaucucggCCGUCGGCgGCAUg -3'
miRNA:   3'- guGUGCCCgUGGa---------GGCAGUUGaCGUA- -5'
29391 5' -56.8 NC_006151.1 + 75159 0.7 0.632937
Target:  5'- gCGCACGGGCAUCaugCCGggcCAcuccucgaggaagcGCUGCAUg -3'
miRNA:   3'- -GUGUGCCCGUGGa--GGCa--GU--------------UGACGUA- -5'
29391 5' -56.8 NC_006151.1 + 105299 0.7 0.646378
Target:  5'- cCGCGCcGGCGCCUCCGagGACgagGCc- -3'
miRNA:   3'- -GUGUGcCCGUGGAGGCagUUGa--CGua -5'
29391 5' -56.8 NC_006151.1 + 99328 0.69 0.656706
Target:  5'- cCugACGGacGCGCagcgcgCCGUCGGCUGCAc -3'
miRNA:   3'- -GugUGCC--CGUGga----GGCAGUUGACGUa -5'
29391 5' -56.8 NC_006151.1 + 137871 0.69 0.667013
Target:  5'- gCGCACGGGCGCagcCUG-CGGCUGCc- -3'
miRNA:   3'- -GUGUGCCCGUGga-GGCaGUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 137995 0.69 0.686511
Target:  5'- aCGCACGcccGGCGCacgCCGUCAcgcgcguGCUGCAc -3'
miRNA:   3'- -GUGUGC---CCGUGga-GGCAGU-------UGACGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.