miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 5' -56.8 NC_006151.1 + 11163 0.66 0.838626
Target:  5'- cCugGCGcGGCGCCUagacaCCGUUu-CUGCAg -3'
miRNA:   3'- -GugUGC-CCGUGGA-----GGCAGuuGACGUa -5'
29391 5' -56.8 NC_006151.1 + 14979 0.66 0.830256
Target:  5'- aGCGCGGGCGCUacgUCGUCGA--GCAc -3'
miRNA:   3'- gUGUGCCCGUGGa--GGCAGUUgaCGUa -5'
29391 5' -56.8 NC_006151.1 + 20108 0.66 0.862558
Target:  5'- gGgACGGGCGCC-CCGgCGACgggGCu- -3'
miRNA:   3'- gUgUGCCCGUGGaGGCaGUUGa--CGua -5'
29391 5' -56.8 NC_006151.1 + 24906 0.67 0.776463
Target:  5'- gACGCGG-C-CCUCCGagccCGACUGCAg -3'
miRNA:   3'- gUGUGCCcGuGGAGGCa---GUUGACGUa -5'
29391 5' -56.8 NC_006151.1 + 39980 0.67 0.795018
Target:  5'- -cCGCGGGCGCC-CCGcCGGCcgUGCu- -3'
miRNA:   3'- guGUGCCCGUGGaGGCaGUUG--ACGua -5'
29391 5' -56.8 NC_006151.1 + 46955 0.66 0.854784
Target:  5'- gACugGGGCgACC-CUGUUgcuGCUGCGg -3'
miRNA:   3'- gUGugCCCG-UGGaGGCAGu--UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 49458 0.72 0.513874
Target:  5'- cCAgACGGGCcggGCCcCCGUCGACUGgAg -3'
miRNA:   3'- -GUgUGCCCG---UGGaGGCAGUUGACgUa -5'
29391 5' -56.8 NC_006151.1 + 53057 0.66 0.838626
Target:  5'- gGCcuCGGGCACCacgaagCUGUCGACgagGCGc -3'
miRNA:   3'- gUGu-GCCCGUGGa-----GGCAGUUGa--CGUa -5'
29391 5' -56.8 NC_006151.1 + 54679 0.66 0.862558
Target:  5'- gGC-CGGGCACCUgCgCGUCGccgGCaGCGUg -3'
miRNA:   3'- gUGuGCCCGUGGA-G-GCAGU---UGaCGUA- -5'
29391 5' -56.8 NC_006151.1 + 54959 0.75 0.36061
Target:  5'- aGCACGcGCGCCUCUGcCAGCUGCu- -3'
miRNA:   3'- gUGUGCcCGUGGAGGCaGUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 55351 0.68 0.727934
Target:  5'- gACaACGGGgGCCUCCGcgagCAGgUGCGc -3'
miRNA:   3'- gUG-UGCCCgUGGAGGCa---GUUgACGUa -5'
29391 5' -56.8 NC_006151.1 + 59361 0.67 0.766983
Target:  5'- gCGCACgGGGCGCCgcgcggCCGUCGuc-GCGUc -3'
miRNA:   3'- -GUGUG-CCCGUGGa-----GGCAGUugaCGUA- -5'
29391 5' -56.8 NC_006151.1 + 64253 0.66 0.862558
Target:  5'- gGCGCGGGcCACgCUCuCGUUGAC-GCGg -3'
miRNA:   3'- gUGUGCCC-GUG-GAG-GCAGUUGaCGUa -5'
29391 5' -56.8 NC_006151.1 + 64913 0.66 0.850021
Target:  5'- gCGCGCGaGCACCUCCacggcguacucgcgcGUCAgcgccuggccgcGCUGCGg -3'
miRNA:   3'- -GUGUGCcCGUGGAGG---------------CAGU------------UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 69465 0.67 0.812972
Target:  5'- -cCGCGGGCGCCggcaCCGUCGccGCcGCc- -3'
miRNA:   3'- guGUGCCCGUGGa---GGCAGU--UGaCGua -5'
29391 5' -56.8 NC_006151.1 + 70168 0.68 0.737847
Target:  5'- aGCGCGGGCGCgaagCgCGUCAucuGCUGCu- -3'
miRNA:   3'- gUGUGCCCGUGga--G-GCAGU---UGACGua -5'
29391 5' -56.8 NC_006151.1 + 70778 0.66 0.862558
Target:  5'- aACGCGcGCGCCUCCGgCAcCgGCGUg -3'
miRNA:   3'- gUGUGCcCGUGGAGGCaGUuGaCGUA- -5'
29391 5' -56.8 NC_006151.1 + 70871 0.78 0.242185
Target:  5'- -uCACGGGCGCCUCCGcCGacgagaucgcgcGCUGCGUc -3'
miRNA:   3'- guGUGCCCGUGGAGGCaGU------------UGACGUA- -5'
29391 5' -56.8 NC_006151.1 + 71101 0.67 0.795018
Target:  5'- gGCGCGGGCGCCgugcgcuaccCCuUCuuccuGCUGCAg -3'
miRNA:   3'- gUGUGCCCGUGGa---------GGcAGu----UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 71576 0.66 0.862558
Target:  5'- aCGgGCGGGCAuCCUCCG-CGggcGCcGCGUc -3'
miRNA:   3'- -GUgUGCCCGU-GGAGGCaGU---UGaCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.