miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 82305 0.66 0.655735
Target:  5'- aGCGCGCCUccgCGUCCgcgaggacGGCCaCCUCcGCGg -3'
miRNA:   3'- -CGUGCGGAa--GCGGG--------UCGG-GGGGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 107953 0.66 0.655735
Target:  5'- cGCA-GCCcccgUCgGCCCAgGCCCCCCc--- -3'
miRNA:   3'- -CGUgCGGa---AG-CGGGU-CGGGGGGuugu -5'
29392 3' -60.7 NC_006151.1 + 109117 0.66 0.655735
Target:  5'- aGC-CGCCg--GCCCGcGCCCgCCGGCc -3'
miRNA:   3'- -CGuGCGGaagCGGGU-CGGGgGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 142786 0.66 0.655735
Target:  5'- uCugGUCUgggGCCCAGCucuCCCCCGAg- -3'
miRNA:   3'- cGugCGGAag-CGGGUCG---GGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 96329 0.66 0.655735
Target:  5'- cGCGCGCgUagagCGCCggguaGGCCUCCCGcCAg -3'
miRNA:   3'- -CGUGCGgAa---GCGGg----UCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 119527 0.66 0.655735
Target:  5'- cCGCGCCUcgCGCCCcGCCUgcgcgcacacaaCCCuGCAc -3'
miRNA:   3'- cGUGCGGAa-GCGGGuCGGG------------GGGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 56404 0.66 0.654737
Target:  5'- cGCGCGCUcaacacgcucaugUUCGCggcccaccUCAGCCCgCUCGACGa -3'
miRNA:   3'- -CGUGCGG-------------AAGCG--------GGUCGGG-GGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 9181 0.66 0.653738
Target:  5'- cGCcCGCCcUCGCCCccuccgucucauGCCaCCCgCGGCAg -3'
miRNA:   3'- -CGuGCGGaAGCGGGu-----------CGG-GGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 114182 0.67 0.645748
Target:  5'- uGCugGCCUaCGUgCAGCagCUCAACAg -3'
miRNA:   3'- -CGugCGGAaGCGgGUCGggGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 37211 0.67 0.645748
Target:  5'- --cCGCCUccuccucCGCCgCGGCCuCCCCGGCc -3'
miRNA:   3'- cguGCGGAa------GCGG-GUCGG-GGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 78784 0.67 0.645748
Target:  5'- --cCGCCUucggcgacUCGCCCgcGGCCCUCCG-CGg -3'
miRNA:   3'- cguGCGGA--------AGCGGG--UCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 83077 0.67 0.645748
Target:  5'- aGCGCGuCCaUCGCCCAcgcguGCaCCUCgAGCGg -3'
miRNA:   3'- -CGUGC-GGaAGCGGGU-----CG-GGGGgUUGU- -5'
29392 3' -60.7 NC_006151.1 + 117394 0.67 0.645748
Target:  5'- cGCGCuuGCCgcaggCGCUgAGCCCCagCAGCGu -3'
miRNA:   3'- -CGUG--CGGaa---GCGGgUCGGGGg-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 34112 0.67 0.645748
Target:  5'- cCGCcCCUUUGCaCCcGCCCCCCcACc -3'
miRNA:   3'- cGUGcGGAAGCG-GGuCGGGGGGuUGu -5'
29392 3' -60.7 NC_006151.1 + 87253 0.67 0.635751
Target:  5'- -gGCGCUguaccCGCCgAuguacGCCCCCCAGCc -3'
miRNA:   3'- cgUGCGGaa---GCGGgU-----CGGGGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 30505 0.67 0.635751
Target:  5'- cGCACGCUcacUCGCCC-GCaCCCCUc--- -3'
miRNA:   3'- -CGUGCGGa--AGCGGGuCG-GGGGGuugu -5'
29392 3' -60.7 NC_006151.1 + 101544 0.67 0.635751
Target:  5'- gGCGCGCCUgCGCCCGGCggaCgUguACGc -3'
miRNA:   3'- -CGUGCGGAaGCGGGUCGg--GgGguUGU- -5'
29392 3' -60.7 NC_006151.1 + 109512 0.67 0.635751
Target:  5'- cGC-CGCUgcCGCCgCAGCCgUCUCAGCAg -3'
miRNA:   3'- -CGuGCGGaaGCGG-GUCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 112823 0.67 0.625751
Target:  5'- aGCGCGCCUUCGCCaCGcgcgugcucacGCUCgUgGACGu -3'
miRNA:   3'- -CGUGCGGAAGCGG-GU-----------CGGGgGgUUGU- -5'
29392 3' -60.7 NC_006151.1 + 66612 0.67 0.625751
Target:  5'- cGC-CGCCUacgacggcgagCGCCUGGCCUUCCAccGCAa -3'
miRNA:   3'- -CGuGCGGAa----------GCGGGUCGGGGGGU--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.