miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 64802 0.66 0.689507
Target:  5'- cCACGCCcUCGCggaagccggcggCCAGCUccuccucgaggauguCCCCGGCGa -3'
miRNA:   3'- cGUGCGGaAGCG------------GGUCGG---------------GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 139241 0.66 0.686543
Target:  5'- cGCGCGUCUccggcgcgacggccaCGCCCGcGCgCUCCGACGg -3'
miRNA:   3'- -CGUGCGGAa--------------GCGGGU-CGgGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 40445 0.66 0.685555
Target:  5'- cGCuuGCCUccccggCGCCU-GCCuCCCCGGCc -3'
miRNA:   3'- -CGugCGGAa-----GCGGGuCGG-GGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 33707 0.66 0.685555
Target:  5'- cGCACGCuCUcucUCGCaCA-CCCCCCAcaucACAc -3'
miRNA:   3'- -CGUGCG-GA---AGCGgGUcGGGGGGU----UGU- -5'
29392 3' -60.7 NC_006151.1 + 17951 0.66 0.685555
Target:  5'- -gGCGUCUccggCGCCC-GCCUgCCGGCGu -3'
miRNA:   3'- cgUGCGGAa---GCGGGuCGGGgGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 68870 0.66 0.675646
Target:  5'- aGCAgCGCCggggcgCGCCCGGCCaCgUCGAgGa -3'
miRNA:   3'- -CGU-GCGGaa----GCGGGUCGG-GgGGUUgU- -5'
29392 3' -60.7 NC_006151.1 + 692 0.66 0.675646
Target:  5'- gGCGCGCCga-GCCU-GCCCCuuCCGucGCAc -3'
miRNA:   3'- -CGUGCGGaagCGGGuCGGGG--GGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 7831 0.66 0.675646
Target:  5'- cCACGCCUuggauacuuuugUCGCCCAcCCaCCCCc--- -3'
miRNA:   3'- cGUGCGGA------------AGCGGGUcGG-GGGGuugu -5'
29392 3' -60.7 NC_006151.1 + 57244 0.66 0.675646
Target:  5'- cGCGCgGCCUcggCGUCCGcGCggCCCUCGACGg -3'
miRNA:   3'- -CGUG-CGGAa--GCGGGU-CG--GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 58872 0.66 0.675646
Target:  5'- gGCGCGCCgggucCGUCCAGgCCguguagauCCCGGCc -3'
miRNA:   3'- -CGUGCGGaa---GCGGGUCgGG--------GGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 9457 0.66 0.675646
Target:  5'- cCGCGUCUUcuuccgcgucCGCuUCGGCCCCCCG-CGg -3'
miRNA:   3'- cGUGCGGAA----------GCG-GGUCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 39437 0.66 0.675646
Target:  5'- cGCGucCGCCUggaCCCGGCCgCCCAguGCGc -3'
miRNA:   3'- -CGU--GCGGAagcGGGUCGGgGGGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 76869 0.66 0.675646
Target:  5'- cCGCGCCgcCGCCaGGagCCCCAGCGc -3'
miRNA:   3'- cGUGCGGaaGCGGgUCggGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 111138 0.66 0.675646
Target:  5'- uGCGCGCCcccgcgCGCgCGGCCgCCUuuAACGc -3'
miRNA:   3'- -CGUGCGGaa----GCGgGUCGGgGGG--UUGU- -5'
29392 3' -60.7 NC_006151.1 + 11651 0.66 0.669684
Target:  5'- cGCACGCCgacCGCCCGcGUuugcuacgaucccugCgCCCGACGg -3'
miRNA:   3'- -CGUGCGGaa-GCGGGU-CG---------------GgGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 38246 0.66 0.665703
Target:  5'- cUACGCCgcgGCCCucuucGCCCCggCCAACGu -3'
miRNA:   3'- cGUGCGGaagCGGGu----CGGGG--GGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 87318 0.66 0.665703
Target:  5'- cGCACGCCgu-GCCgGcGCUCCCgGGCc -3'
miRNA:   3'- -CGUGCGGaagCGGgU-CGGGGGgUUGu -5'
29392 3' -60.7 NC_006151.1 + 108175 0.66 0.665703
Target:  5'- --cCGCCc-CGCCC-GCCCCCCcACc -3'
miRNA:   3'- cguGCGGaaGCGGGuCGGGGGGuUGu -5'
29392 3' -60.7 NC_006151.1 + 15174 0.66 0.665703
Target:  5'- cGCGCGCCcugCGCCgC-GCCCUCUuuGACu -3'
miRNA:   3'- -CGUGCGGaa-GCGG-GuCGGGGGG--UUGu -5'
29392 3' -60.7 NC_006151.1 + 17556 0.66 0.664707
Target:  5'- gGUGCGCC-UCGCCCAcgaaggcggggauGCgCCCgGACc -3'
miRNA:   3'- -CGUGCGGaAGCGGGU-------------CGgGGGgUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.