miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 14956 0.73 0.301965
Target:  5'- --cCGCC-UCGaccCCCAGCCCCCCAAg- -3'
miRNA:   3'- cguGCGGaAGC---GGGUCGGGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 15065 0.79 0.12321
Target:  5'- -gGCGCCUUCuGCgCGGCCCCCUGGCGc -3'
miRNA:   3'- cgUGCGGAAG-CGgGUCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 15174 0.66 0.665703
Target:  5'- cGCGCGCCcugCGCCgC-GCCCUCUuuGACu -3'
miRNA:   3'- -CGUGCGGaa-GCGG-GuCGGGGGG--UUGu -5'
29392 3' -60.7 NC_006151.1 + 15221 0.76 0.202649
Target:  5'- aCGCGCCagCGCCCcucGGCCCCCUgcuGGCAg -3'
miRNA:   3'- cGUGCGGaaGCGGG---UCGGGGGG---UUGU- -5'
29392 3' -60.7 NC_006151.1 + 15900 0.69 0.527116
Target:  5'- cGCGCGCCccgacgCgGCCCGccGCCgCCCCGugAg -3'
miRNA:   3'- -CGUGCGGaa----G-CGGGU--CGG-GGGGUugU- -5'
29392 3' -60.7 NC_006151.1 + 16886 0.67 0.594813
Target:  5'- gGCGCGCUcgCGUCCGuuGCCgcgcccgCCCCGGCGc -3'
miRNA:   3'- -CGUGCGGaaGCGGGU--CGG-------GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 17556 0.66 0.664707
Target:  5'- gGUGCGCC-UCGCCCAcgaaggcggggauGCgCCCgGACc -3'
miRNA:   3'- -CGUGCGGaAGCGGGU-------------CGgGGGgUUGu -5'
29392 3' -60.7 NC_006151.1 + 17951 0.66 0.685555
Target:  5'- -gGCGUCUccggCGCCC-GCCUgCCGGCGu -3'
miRNA:   3'- cgUGCGGAa---GCGGGuCGGGgGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 18588 0.71 0.376107
Target:  5'- aGCACGCaga-GCCagaCGGcCCCCCCGACGa -3'
miRNA:   3'- -CGUGCGgaagCGG---GUC-GGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 18949 0.67 0.605773
Target:  5'- gGCAgGCggUCaGCaCCGGUCCCCgAGCAg -3'
miRNA:   3'- -CGUgCGgaAG-CG-GGUCGGGGGgUUGU- -5'
29392 3' -60.7 NC_006151.1 + 21027 0.69 0.507052
Target:  5'- -gACGCCggCGCCCcugaagaGGaCgCCCCCGACGc -3'
miRNA:   3'- cgUGCGGaaGCGGG-------UC-G-GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 23127 0.66 0.695421
Target:  5'- cCGCGCCccuccuccgUCGCCgGG-CCCUCGGCGg -3'
miRNA:   3'- cGUGCGGa--------AGCGGgUCgGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 24967 0.74 0.245328
Target:  5'- uGCGCGCCgcggccugcCGCgUCAGCCCCCCGuCAu -3'
miRNA:   3'- -CGUGCGGaa-------GCG-GGUCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 25430 0.66 0.694436
Target:  5'- cGCGCGCCcgucaUcccuccccgcggcCGCCC-GCCCCCCccuGGCGc -3'
miRNA:   3'- -CGUGCGGa----A-------------GCGGGuCGGGGGG---UUGU- -5'
29392 3' -60.7 NC_006151.1 + 26365 0.66 0.695421
Target:  5'- cCGCGUCggggCGCgC-GUCCCCCGGCGg -3'
miRNA:   3'- cGUGCGGaa--GCGgGuCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 26610 0.68 0.575963
Target:  5'- aCACGUCgucgUCGCCCAcGCUggCCCCGuCAa -3'
miRNA:   3'- cGUGCGGa---AGCGGGU-CGG--GGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 27618 0.71 0.417519
Target:  5'- cGgAC-CCga-GCCCGGCCgCCCCGACGg -3'
miRNA:   3'- -CgUGcGGaagCGGGUCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 27988 0.69 0.508
Target:  5'- cCACGCCcaCuCCCGGCCcaCCCCGACc -3'
miRNA:   3'- cGUGCGGaaGcGGGUCGG--GGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 28313 0.67 0.615756
Target:  5'- gGCGCGUCcccggggCGCCC-GCCCCCgGGg- -3'
miRNA:   3'- -CGUGCGGaa-----GCGGGuCGGGGGgUUgu -5'
29392 3' -60.7 NC_006151.1 + 29498 0.73 0.28856
Target:  5'- cGCugGCCU-CGagCCAGCCCUCCGcgGCGa -3'
miRNA:   3'- -CGugCGGAaGCg-GGUCGGGGGGU--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.