miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 14025 0.73 0.282035
Target:  5'- -uGgGCCcgUCgGCCCGGCCCCCuCGACGg -3'
miRNA:   3'- cgUgCGGa-AG-CGGGUCGGGGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 29498 0.73 0.28856
Target:  5'- cGCugGCCU-CGagCCAGCCCUCCGcgGCGa -3'
miRNA:   3'- -CGugCGGAaGCg-GGUCGGGGGGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 14956 0.73 0.301965
Target:  5'- --cCGCC-UCGaccCCCAGCCCCCCAAg- -3'
miRNA:   3'- cguGCGGaAGC---GGGUCGGGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 61871 0.73 0.308846
Target:  5'- gGCGCGUCUgCGCCUGGaCCCUCCAGg- -3'
miRNA:   3'- -CGUGCGGAaGCGGGUC-GGGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 52108 0.73 0.315845
Target:  5'- aGCGCGCC---GCgCAGCCCCCCcauaAACAc -3'
miRNA:   3'- -CGUGCGGaagCGgGUCGGGGGG----UUGU- -5'
29392 3' -60.7 NC_006151.1 + 50007 0.73 0.315845
Target:  5'- uGCGCGCCgcgCGCgCGGCCCgCgCGGCGc -3'
miRNA:   3'- -CGUGCGGaa-GCGgGUCGGGgG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 39001 0.72 0.322964
Target:  5'- cGCGCGCCgcggCGCCCcGCUCCgCCGccGCGc -3'
miRNA:   3'- -CGUGCGGaa--GCGGGuCGGGG-GGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 39184 0.72 0.322964
Target:  5'- cGC-CGCCUUCGCCCA-CCgCCUCuGCAc -3'
miRNA:   3'- -CGuGCGGAAGCGGGUcGG-GGGGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 58807 0.72 0.322964
Target:  5'- aGCGCGCCgcguaCGCgCCGGCCCCgucgCGGCAc -3'
miRNA:   3'- -CGUGCGGaa---GCG-GGUCGGGGg---GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 105299 0.72 0.337558
Target:  5'- cCGCGCCggCGCCUccgaggacgaGGCCCCCCuGGCc -3'
miRNA:   3'- cGUGCGGaaGCGGG----------UCGGGGGG-UUGu -5'
29392 3' -60.7 NC_006151.1 + 39219 0.72 0.345032
Target:  5'- cGCACGCCUggGCCgGgaacuggaccggGCgCCCCGACAu -3'
miRNA:   3'- -CGUGCGGAagCGGgU------------CGgGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 84613 0.72 0.345032
Target:  5'- cGCGCGCCgcCGCgCGGCCgCCgCGGCGc -3'
miRNA:   3'- -CGUGCGGaaGCGgGUCGGgGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 48818 0.72 0.351861
Target:  5'- -gACGCCUUCGCCgccgaguucgacgUGGCCCCCUcguGGCGc -3'
miRNA:   3'- cgUGCGGAAGCGG-------------GUCGGGGGG---UUGU- -5'
29392 3' -60.7 NC_006151.1 + 58240 0.72 0.352626
Target:  5'- cGCGCGCCgccaCGCgCCGGCCCgcgggCCgCAGCAc -3'
miRNA:   3'- -CGUGCGGaa--GCG-GGUCGGG-----GG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 67566 0.72 0.352626
Target:  5'- -gGCGCCcgcgggCGUCCAGCCCgCCGAUg -3'
miRNA:   3'- cgUGCGGaa----GCGGGUCGGGgGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 87378 0.72 0.352626
Target:  5'- cGCACGUCccCGCCCagguGGUCCCgCAGCAg -3'
miRNA:   3'- -CGUGCGGaaGCGGG----UCGGGGgGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 134962 0.72 0.352626
Target:  5'- uGCAgGCC-UCGgCCAGCCUCCgGGCc -3'
miRNA:   3'- -CGUgCGGaAGCgGGUCGGGGGgUUGu -5'
29392 3' -60.7 NC_006151.1 + 50126 0.72 0.360336
Target:  5'- uGCGCGCCcgaCGCCCacgcgAGCCCcgcgcgcgCCCGACGa -3'
miRNA:   3'- -CGUGCGGaa-GCGGG-----UCGGG--------GGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 139581 0.71 0.368164
Target:  5'- -aGCGCCUggGCUCGcGCCCCCCcgAGCGg -3'
miRNA:   3'- cgUGCGGAagCGGGU-CGGGGGG--UUGU- -5'
29392 3' -60.7 NC_006151.1 + 7077 0.71 0.368164
Target:  5'- cGCGCGCCUcugauuugcaUGCCCGGCCCgCUCuGCGg -3'
miRNA:   3'- -CGUGCGGAa---------GCGGGUCGGG-GGGuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.