miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 123431 1.1 0.00086
Target:  5'- cGCACGCCUUCGCCCAGCCCCCCAACAc -3'
miRNA:   3'- -CGUGCGGAAGCGGGUCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 48776 0.83 0.062797
Target:  5'- -gACGCCUcCGCCCcGCCCCCCGACc -3'
miRNA:   3'- cgUGCGGAaGCGGGuCGGGGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 86437 0.82 0.083744
Target:  5'- cGCgGCGCCUggCGCCCGGCgaggCCCCCGACGa -3'
miRNA:   3'- -CG-UGCGGAa-GCGGGUCG----GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 62015 0.81 0.09783
Target:  5'- uGCGCGCCgcccuggCGgCCAGCCCCCCGcuGCGc -3'
miRNA:   3'- -CGUGCGGaa-----GCgGGUCGGGGGGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 47946 0.8 0.103005
Target:  5'- cCACGCUccagUUGCCCcGCCCCCCGGCAc -3'
miRNA:   3'- cGUGCGGa---AGCGGGuCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 87525 0.8 0.105687
Target:  5'- cCGCGCC--CGCCuCGGCCCCCCAGCc -3'
miRNA:   3'- cGUGCGGaaGCGG-GUCGGGGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 15065 0.79 0.12321
Target:  5'- -gGCGCCUUCuGCgCGGCCCCCUGGCGc -3'
miRNA:   3'- cgUGCGGAAG-CGgGUCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 84176 0.77 0.162484
Target:  5'- gGCGCGCCUccucgccgcCGCCguGCCCCCgGGCGg -3'
miRNA:   3'- -CGUGCGGAa--------GCGGguCGGGGGgUUGU- -5'
29392 3' -60.7 NC_006151.1 + 34015 0.77 0.17074
Target:  5'- gGCGCGCCg--GCCCGGCCCuCCCcGCc -3'
miRNA:   3'- -CGUGCGGaagCGGGUCGGG-GGGuUGu -5'
29392 3' -60.7 NC_006151.1 + 86990 0.76 0.183376
Target:  5'- cGCuCGCCcUCGCCCgagccccGGCCCCCCGcCAg -3'
miRNA:   3'- -CGuGCGGaAGCGGG-------UCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 15221 0.76 0.202649
Target:  5'- aCGCGCCagCGCCCcucGGCCCCCUgcuGGCAg -3'
miRNA:   3'- cGUGCGGaaGCGGG---UCGGGGGG---UUGU- -5'
29392 3' -60.7 NC_006151.1 + 86919 0.75 0.217844
Target:  5'- -aGCGCCcggCGCCCAGCCUggaguCCCAGCu -3'
miRNA:   3'- cgUGCGGaa-GCGGGUCGGG-----GGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 57115 0.75 0.23961
Target:  5'- cGCGCGCCgccgCGCCCGGCggucgCCCCuGCGc -3'
miRNA:   3'- -CGUGCGGaa--GCGGGUCGg----GGGGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 24967 0.74 0.245328
Target:  5'- uGCGCGCCgcggccugcCGCgUCAGCCCCCCGuCAu -3'
miRNA:   3'- -CGUGCGGaa-------GCG-GGUCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 48200 0.74 0.245328
Target:  5'- aGC-CGCCggucaCGCCCGcGCCCCCCAcccGCGc -3'
miRNA:   3'- -CGuGCGGaa---GCGGGU-CGGGGGGU---UGU- -5'
29392 3' -60.7 NC_006151.1 + 38962 0.74 0.257103
Target:  5'- gGCGCucaCCUUCGaCCCGGCCgCCCUGGCGc -3'
miRNA:   3'- -CGUGc--GGAAGC-GGGUCGG-GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 10832 0.74 0.261332
Target:  5'- cGCGCGCaccccgucccccccCUuccccuuccccUCGCCCcGGCCCCCCGGCu -3'
miRNA:   3'- -CGUGCG--------------GA-----------AGCGGG-UCGGGGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 58692 0.74 0.263162
Target:  5'- uGCGCGCCgcgccacagCGCCgGGUCCgCCAGCGc -3'
miRNA:   3'- -CGUGCGGaa-------GCGGgUCGGGgGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 90245 0.74 0.263162
Target:  5'- gGCugGCCagCGCCCAGCCCg-CGGCGa -3'
miRNA:   3'- -CGugCGGaaGCGGGUCGGGggGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 79013 0.74 0.275627
Target:  5'- cGCuCGCUcgCcCCCAGUCCCCCGACGc -3'
miRNA:   3'- -CGuGCGGaaGcGGGUCGGGGGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.