miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 692 0.66 0.675646
Target:  5'- gGCGCGCCga-GCCU-GCCCCuuCCGucGCAc -3'
miRNA:   3'- -CGUGCGGaagCGGGuCGGGG--GGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 751 0.66 0.695421
Target:  5'- cGCgGCGCC--CGCCCcauuGGCUCCCCucGCGc -3'
miRNA:   3'- -CG-UGCGGaaGCGGG----UCGGGGGGu-UGU- -5'
29392 3' -60.7 NC_006151.1 + 2203 0.68 0.556269
Target:  5'- cGCGgGCCggugggUCuCCaCGGCgCCCCCGGCGg -3'
miRNA:   3'- -CGUgCGGa-----AGcGG-GUCG-GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 3575 0.67 0.625751
Target:  5'- aGCgGCGCUUgCGCCgGGgCCCCCGGu- -3'
miRNA:   3'- -CG-UGCGGAaGCGGgUCgGGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 6844 0.68 0.58587
Target:  5'- --uUGCa--UGCCCGGCCCCCgCGGCGg -3'
miRNA:   3'- cguGCGgaaGCGGGUCGGGGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 6929 0.67 0.619753
Target:  5'- uGCAUGUCcg-GCCCcgagggcgccaucuuGGCCCCUCGACGg -3'
miRNA:   3'- -CGUGCGGaagCGGG---------------UCGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 6998 0.69 0.527116
Target:  5'- uCGCGUCUacuuugcaUGUCCGGCCCCCgCGGCGg -3'
miRNA:   3'- cGUGCGGAa-------GCGGGUCGGGGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 7077 0.71 0.368164
Target:  5'- cGCGCGCCUcugauuugcaUGCCCGGCCCgCUCuGCGg -3'
miRNA:   3'- -CGUGCGGAa---------GCGGGUCGGG-GGGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 7649 0.68 0.589842
Target:  5'- cCGCGCCUcgCGCUCggcgcgcgcuccgagGGCgCCCCAGCc -3'
miRNA:   3'- cGUGCGGAa-GCGGG---------------UCGgGGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 7831 0.66 0.675646
Target:  5'- cCACGCCUuggauacuuuugUCGCCCAcCCaCCCCc--- -3'
miRNA:   3'- cGUGCGGA------------AGCGGGUcGG-GGGGuugu -5'
29392 3' -60.7 NC_006151.1 + 8300 0.68 0.58587
Target:  5'- cGgGCGCCgcguccCGCCCcgAGCCCCCgGGg- -3'
miRNA:   3'- -CgUGCGGaa----GCGGG--UCGGGGGgUUgu -5'
29392 3' -60.7 NC_006151.1 + 9181 0.66 0.653738
Target:  5'- cGCcCGCCcUCGCCCccuccgucucauGCCaCCCgCGGCAg -3'
miRNA:   3'- -CGuGCGGaAGCGGGu-----------CGG-GGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 9457 0.66 0.675646
Target:  5'- cCGCGUCUUcuuccgcgucCGCuUCGGCCCCCCG-CGg -3'
miRNA:   3'- cGUGCGGAA----------GCG-GGUCGGGGGGUuGU- -5'
29392 3' -60.7 NC_006151.1 + 10500 0.68 0.536775
Target:  5'- cGCGCGCCcgcCGCCgcaGGCgcgUCCCCGGCGc -3'
miRNA:   3'- -CGUGCGGaa-GCGGg--UCG---GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 10544 0.67 0.625751
Target:  5'- cCACGCCccguucCGCCCGGCgCCCaauGGCGc -3'
miRNA:   3'- cGUGCGGaa----GCGGGUCGgGGGg--UUGU- -5'
29392 3' -60.7 NC_006151.1 + 10832 0.74 0.261332
Target:  5'- cGCGCGCaccccgucccccccCUuccccuuccccUCGCCCcGGCCCCCCGGCu -3'
miRNA:   3'- -CGUGCG--------------GA-----------AGCGGG-UCGGGGGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 11651 0.66 0.669684
Target:  5'- cGCACGCCgacCGCCCGcGUuugcuacgaucccugCgCCCGACGg -3'
miRNA:   3'- -CGUGCGGaa-GCGGGU-CG---------------GgGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 14025 0.73 0.282035
Target:  5'- -uGgGCCcgUCgGCCCGGCCCCCuCGACGg -3'
miRNA:   3'- cgUgCGGa-AG-CGGGUCGGGGG-GUUGU- -5'
29392 3' -60.7 NC_006151.1 + 14398 0.66 0.704258
Target:  5'- cGCGCGUCcgUCGCCUaggugagucggggGGCUUCCCGgguGCGg -3'
miRNA:   3'- -CGUGCGGa-AGCGGG-------------UCGGGGGGU---UGU- -5'
29392 3' -60.7 NC_006151.1 + 14702 0.68 0.566094
Target:  5'- gGCcccCGUCccaGCCCAGCCCCCCc--- -3'
miRNA:   3'- -CGu--GCGGaagCGGGUCGGGGGGuugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.