miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 3' -60.7 NC_006151.1 + 142947 0.69 0.498553
Target:  5'- cGCGCGCCcgcccUCGCCCAucGCCaUCCaCAACc -3'
miRNA:   3'- -CGUGCGGa----AGCGGGU--CGG-GGG-GUUGu -5'
29392 3' -60.7 NC_006151.1 + 142786 0.66 0.655735
Target:  5'- uCugGUCUgggGCCCAGCucuCCCCCGAg- -3'
miRNA:   3'- cGugCGGAag-CGGGUCG---GGGGGUUgu -5'
29392 3' -60.7 NC_006151.1 + 142743 0.67 0.605773
Target:  5'- uCugGCCggggGCCCagcucucccccgGGCCCCCCcACAa -3'
miRNA:   3'- cGugCGGaag-CGGG------------UCGGGGGGuUGU- -5'
29392 3' -60.7 NC_006151.1 + 139665 0.69 0.508
Target:  5'- gGCGCGCC---GCCCgacaGGCCCUgCGGCAg -3'
miRNA:   3'- -CGUGCGGaagCGGG----UCGGGGgGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 139581 0.71 0.368164
Target:  5'- -aGCGCCUggGCUCGcGCCCCCCcgAGCGg -3'
miRNA:   3'- cgUGCGGAagCGGGU-CGGGGGG--UUGU- -5'
29392 3' -60.7 NC_006151.1 + 139241 0.66 0.686543
Target:  5'- cGCGCGUCUccggcgcgacggccaCGCCCGcGCgCUCCGACGg -3'
miRNA:   3'- -CGUGCGGAa--------------GCGGGU-CGgGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 138640 0.66 0.695421
Target:  5'- cGCGCcggacugggagGCCUUcaaCGCCaCGGCcaucuacguggCCCCCAACGa -3'
miRNA:   3'- -CGUG-----------CGGAA---GCGG-GUCG-----------GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 138331 0.67 0.615756
Target:  5'- uGCGgGCCcggcacgCGCgCAGCCCgCCGGCc -3'
miRNA:   3'- -CGUgCGGaa-----GCGgGUCGGGgGGUUGu -5'
29392 3' -60.7 NC_006151.1 + 137632 0.69 0.527116
Target:  5'- -gGCGCCUcCGCCCucguccgcGCCCccguCCCGGCGg -3'
miRNA:   3'- cgUGCGGAaGCGGGu-------CGGG----GGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 137020 0.67 0.613758
Target:  5'- gGCGC-CCUgcUCGgCCugccggacgcguGCCCCCCGGCGc -3'
miRNA:   3'- -CGUGcGGA--AGCgGGu-----------CGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 136886 0.71 0.392337
Target:  5'- -aGCGCCUcgCGCCCcacGGCugggugcgcgCCCCCGACGa -3'
miRNA:   3'- cgUGCGGAa-GCGGG---UCG----------GGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 136755 0.7 0.470701
Target:  5'- cGCGCGCC-UCGcCCCGGCCaugggCgCCGGCu -3'
miRNA:   3'- -CGUGCGGaAGC-GGGUCGGg----G-GGUUGu -5'
29392 3' -60.7 NC_006151.1 + 136077 0.66 0.695421
Target:  5'- aCGCGCCggagCGCCCGcuGCgCUCCAucGCGg -3'
miRNA:   3'- cGUGCGGaa--GCGGGU--CGgGGGGU--UGU- -5'
29392 3' -60.7 NC_006151.1 + 135810 0.69 0.498553
Target:  5'- aGCGCGCCgagGCCgAGCUuuuagcgcgccgCCCCGGCGu -3'
miRNA:   3'- -CGUGCGGaagCGGgUCGG------------GGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 135180 0.67 0.625751
Target:  5'- gGCGCcggcuGCCgcCGCCgGGCCaguCCCAGCGu -3'
miRNA:   3'- -CGUG-----CGGaaGCGGgUCGGg--GGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 134962 0.72 0.352626
Target:  5'- uGCAgGCC-UCGgCCAGCCUCCgGGCc -3'
miRNA:   3'- -CGUgCGGaAGCgGGUCGGGGGgUUGu -5'
29392 3' -60.7 NC_006151.1 + 133331 0.71 0.409016
Target:  5'- gGCGCGCCgggCGgCCGGUUCCgCGGCGg -3'
miRNA:   3'- -CGUGCGGaa-GCgGGUCGGGGgGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 133043 0.7 0.461593
Target:  5'- gGC-CGCCUcgaUCagGUCCAGCCCCUCGcACAc -3'
miRNA:   3'- -CGuGCGGA---AG--CGGGUCGGGGGGU-UGU- -5'
29392 3' -60.7 NC_006151.1 + 132855 0.71 0.391515
Target:  5'- gGCG-GCCg--GCCCGgggccgcGCCCCCCAGCAg -3'
miRNA:   3'- -CGUgCGGaagCGGGU-------CGGGGGGUUGU- -5'
29392 3' -60.7 NC_006151.1 + 130374 0.69 0.498553
Target:  5'- cGCGCGCCgcggCGUCCAGCgCgaaggCCAGCGc -3'
miRNA:   3'- -CGUGCGGaa--GCGGGUCGgGg----GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.