miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 5' -55.3 NC_006151.1 + 123465 1.05 0.004757
Target:  5'- cUACUUUGCGGUGGAGAACGUGGGCCUc -3'
miRNA:   3'- -AUGAAACGCCACCUCUUGCACCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 133152 0.75 0.448823
Target:  5'- gACUcgGCGGcGGcgcGGGCGUGGGCCUc -3'
miRNA:   3'- aUGAaaCGCCaCCu--CUUGCACCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 45324 0.73 0.546758
Target:  5'- gGCUgggagggugGCGGUGGAGGacgggaGCGUGuGGCCc -3'
miRNA:   3'- aUGAaa-------CGCCACCUCU------UGCAC-CCGGa -5'
29392 5' -55.3 NC_006151.1 + 19866 0.72 0.598303
Target:  5'- gGCUcgGggccuCGGUGGAGAGCGccaGGGCCa -3'
miRNA:   3'- aUGAaaC-----GCCACCUCUUGCa--CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 66669 0.71 0.619153
Target:  5'- gGCg--GCGGUGGAcgccaugcGGACGUccgGGGCCUu -3'
miRNA:   3'- aUGaaaCGCCACCU--------CUUGCA---CCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 121663 0.7 0.712486
Target:  5'- gGCgg-GCGGagggGGGGAGCGagcGGGCCg -3'
miRNA:   3'- aUGaaaCGCCa---CCUCUUGCa--CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 10969 0.69 0.752521
Target:  5'- uUACggUGUGGUGGgugucacgguGGAGCGggccggGGGCCc -3'
miRNA:   3'- -AUGaaACGCCACC----------UCUUGCa-----CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 130887 0.69 0.781422
Target:  5'- gGCg--GCGGUGGAGG-CG-GcGGCCg -3'
miRNA:   3'- aUGaaaCGCCACCUCUuGCaC-CCGGa -5'
29392 5' -55.3 NC_006151.1 + 30820 0.68 0.817961
Target:  5'- cGCgg-GCGGgaGGAGuuGCGUGGGCg- -3'
miRNA:   3'- aUGaaaCGCCa-CCUCu-UGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 49625 0.68 0.817961
Target:  5'- gUGCUgcGCGaGUGGGG---GUGGGCCg -3'
miRNA:   3'- -AUGAaaCGC-CACCUCuugCACCCGGa -5'
29392 5' -55.3 NC_006151.1 + 100466 0.67 0.83521
Target:  5'- cGCUgcGCGaGUGcGAG-GCGcUGGGCCUg -3'
miRNA:   3'- aUGAaaCGC-CAC-CUCuUGC-ACCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 26291 0.67 0.851691
Target:  5'- gACggUGgGGUGGGGGGgGUGGGg-- -3'
miRNA:   3'- aUGaaACgCCACCUCUUgCACCCgga -5'
29392 5' -55.3 NC_006151.1 + 44512 0.67 0.851691
Target:  5'- -----gGCGGUGGGGAaGCGcGGGCg- -3'
miRNA:   3'- augaaaCGCCACCUCU-UGCaCCCGga -5'
29392 5' -55.3 NC_006151.1 + 5853 0.67 0.851691
Target:  5'- ----cUGCGGaGGGGGACGagcgcccgGGGCCg -3'
miRNA:   3'- augaaACGCCaCCUCUUGCa-------CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 15635 0.67 0.859624
Target:  5'- gACUUUGaCGG-GGccAGCGUGGGCg- -3'
miRNA:   3'- aUGAAAC-GCCaCCucUUGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 84702 0.67 0.867343
Target:  5'- cGCUggagcgGCaGGUGGAGcGCGU-GGCCg -3'
miRNA:   3'- aUGAaa----CG-CCACCUCuUGCAcCCGGa -5'
29392 5' -55.3 NC_006151.1 + 133355 0.67 0.874842
Target:  5'- gGCg--GCGGUGGuGGugGUGGuggugguggcgGCCg -3'
miRNA:   3'- aUGaaaCGCCACCuCUugCACC-----------CGGa -5'
29392 5' -55.3 NC_006151.1 + 30692 0.67 0.874842
Target:  5'- -----gGCGGgcgGGGGggUGUcgGGGCCg -3'
miRNA:   3'- augaaaCGCCa--CCUCuuGCA--CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 75405 0.66 0.882114
Target:  5'- gUGCgugcGCGGguccgGGAGGcccgGCGUGGGCg- -3'
miRNA:   3'- -AUGaaa-CGCCa----CCUCU----UGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 102195 0.66 0.882114
Target:  5'- gACUUUcUGGUGGAGAACG-GcGCCc -3'
miRNA:   3'- aUGAAAcGCCACCUCUUGCaCcCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.