miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29392 5' -55.3 NC_006151.1 + 5853 0.67 0.851691
Target:  5'- ----cUGCGGaGGGGGACGagcgcccgGGGCCg -3'
miRNA:   3'- augaaACGCCaCCUCUUGCa-------CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 9489 0.66 0.914925
Target:  5'- cGCggccGCGGcgugGGAGAGCG-GGGCg- -3'
miRNA:   3'- aUGaaa-CGCCa---CCUCUUGCaCCCGga -5'
29392 5' -55.3 NC_006151.1 + 10969 0.69 0.752521
Target:  5'- uUACggUGUGGUGGgugucacgguGGAGCGggccggGGGCCc -3'
miRNA:   3'- -AUGaaACGCCACC----------UCUUGCa-----CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 11808 0.66 0.902526
Target:  5'- gGCggggUGgGGUGGGGGGCGgcgGcGGCUc -3'
miRNA:   3'- aUGaa--ACgCCACCUCUUGCa--C-CCGGa -5'
29392 5' -55.3 NC_006151.1 + 15635 0.67 0.859624
Target:  5'- gACUUUGaCGG-GGccAGCGUGGGCg- -3'
miRNA:   3'- aUGAAAC-GCCaCCucUUGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 19866 0.72 0.598303
Target:  5'- gGCUcgGggccuCGGUGGAGAGCGccaGGGCCa -3'
miRNA:   3'- aUGAaaC-----GCCACCUCUUGCa--CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 26291 0.67 0.851691
Target:  5'- gACggUGgGGUGGGGGGgGUGGGg-- -3'
miRNA:   3'- aUGaaACgCCACCUCUUgCACCCgga -5'
29392 5' -55.3 NC_006151.1 + 30692 0.67 0.874842
Target:  5'- -----gGCGGgcgGGGGggUGUcgGGGCCg -3'
miRNA:   3'- augaaaCGCCa--CCUCuuGCA--CCCGGa -5'
29392 5' -55.3 NC_006151.1 + 30820 0.68 0.817961
Target:  5'- cGCgg-GCGGgaGGAGuuGCGUGGGCg- -3'
miRNA:   3'- aUGaaaCGCCa-CCUCu-UGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 33092 0.66 0.908848
Target:  5'- gGCgg-GCGGUGGAGGGgGgagaggaaggucUGGGCg- -3'
miRNA:   3'- aUGaaaCGCCACCUCUUgC------------ACCCGga -5'
29392 5' -55.3 NC_006151.1 + 42996 0.66 0.902526
Target:  5'- ----aUGCGGgGGAGGGCGgcGGGCgCUu -3'
miRNA:   3'- augaaACGCCaCCUCUUGCa-CCCG-GA- -5'
29392 5' -55.3 NC_006151.1 + 44512 0.67 0.851691
Target:  5'- -----gGCGGUGGGGAaGCGcGGGCg- -3'
miRNA:   3'- augaaaCGCCACCUCU-UGCaCCCGga -5'
29392 5' -55.3 NC_006151.1 + 44813 0.66 0.908848
Target:  5'- gUGCUaugGgGGUGcGAGGGCGUcGGGaCCg -3'
miRNA:   3'- -AUGAaa-CgCCAC-CUCUUGCA-CCC-GGa -5'
29392 5' -55.3 NC_006151.1 + 45324 0.73 0.546758
Target:  5'- gGCUgggagggugGCGGUGGAGGacgggaGCGUGuGGCCc -3'
miRNA:   3'- aUGAaa-------CGCCACCUCU------UGCAC-CCGGa -5'
29392 5' -55.3 NC_006151.1 + 45392 0.66 0.89596
Target:  5'- gACgaUGaUGGUGGuGGugGUGGuGCCg -3'
miRNA:   3'- aUGaaAC-GCCACCuCUugCACC-CGGa -5'
29392 5' -55.3 NC_006151.1 + 49625 0.68 0.817961
Target:  5'- gUGCUgcGCGaGUGGGG---GUGGGCCg -3'
miRNA:   3'- -AUGAaaCGC-CACCUCuugCACCCGGa -5'
29392 5' -55.3 NC_006151.1 + 66669 0.71 0.619153
Target:  5'- gGCg--GCGGUGGAcgccaugcGGACGUccgGGGCCUu -3'
miRNA:   3'- aUGaaaCGCCACCU--------CUUGCA---CCCGGA- -5'
29392 5' -55.3 NC_006151.1 + 73048 0.66 0.908848
Target:  5'- -----cGCGGUGGGGGugcGCG-GGGUCc -3'
miRNA:   3'- augaaaCGCCACCUCU---UGCaCCCGGa -5'
29392 5' -55.3 NC_006151.1 + 75405 0.66 0.882114
Target:  5'- gUGCgugcGCGGguccgGGAGGcccgGCGUGGGCg- -3'
miRNA:   3'- -AUGaaa-CGCCa----CCUCU----UGCACCCGga -5'
29392 5' -55.3 NC_006151.1 + 84041 0.66 0.902526
Target:  5'- gUGCguggUGCGGcUGG-GggUG-GGGCCg -3'
miRNA:   3'- -AUGaa--ACGCC-ACCuCuuGCaCCCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.