Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29392 | 5' | -55.3 | NC_006151.1 | + | 84702 | 0.67 | 0.867343 |
Target: 5'- cGCUggagcgGCaGGUGGAGcGCGU-GGCCg -3' miRNA: 3'- aUGAaa----CG-CCACCUCuUGCAcCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 98821 | 0.66 | 0.89596 |
Target: 5'- gGCguugGCGGUGcGccagaugcAGAACGaGGGCCUg -3' miRNA: 3'- aUGaaa-CGCCAC-C--------UCUUGCaCCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 100466 | 0.67 | 0.83521 |
Target: 5'- cGCUgcGCGaGUGcGAG-GCGcUGGGCCUg -3' miRNA: 3'- aUGAaaCGC-CAC-CUCuUGC-ACCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 102195 | 0.66 | 0.882114 |
Target: 5'- gACUUUcUGGUGGAGAACG-GcGCCc -3' miRNA: 3'- aUGAAAcGCCACCUCUUGCaCcCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 106344 | 0.66 | 0.89596 |
Target: 5'- cGCUggacGCGGUGGAcacgcuGGACGcGGGCg- -3' miRNA: 3'- aUGAaa--CGCCACCU------CUUGCaCCCGga -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 112057 | 0.66 | 0.908848 |
Target: 5'- gGCg--GCGGcGGuGGugGUGGGgCUg -3' miRNA: 3'- aUGaaaCGCCaCCuCUugCACCCgGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 121663 | 0.7 | 0.712486 |
Target: 5'- gGCgg-GCGGagggGGGGAGCGagcGGGCCg -3' miRNA: 3'- aUGaaaCGCCa---CCUCUUGCa--CCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 123465 | 1.05 | 0.004757 |
Target: 5'- cUACUUUGCGGUGGAGAACGUGGGCCUc -3' miRNA: 3'- -AUGAAACGCCACCUCUUGCACCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 130887 | 0.69 | 0.781422 |
Target: 5'- gGCg--GCGGUGGAGG-CG-GcGGCCg -3' miRNA: 3'- aUGaaaCGCCACCUCUuGCaC-CCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 133152 | 0.75 | 0.448823 |
Target: 5'- gACUcgGCGGcGGcgcGGGCGUGGGCCUc -3' miRNA: 3'- aUGAaaCGCCaCCu--CUUGCACCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 133355 | 0.67 | 0.874842 |
Target: 5'- gGCg--GCGGUGGuGGugGUGGuggugguggcgGCCg -3' miRNA: 3'- aUGaaaCGCCACCuCUugCACC-----------CGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 143296 | 0.66 | 0.889155 |
Target: 5'- cGCU---CGGgGGAGAGC-UGGGCCUc -3' miRNA: 3'- aUGAaacGCCaCCUCUUGcACCCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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