Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29392 | 5' | -55.3 | NC_006151.1 | + | 5853 | 0.67 | 0.851691 |
Target: 5'- ----cUGCGGaGGGGGACGagcgcccgGGGCCg -3' miRNA: 3'- augaaACGCCaCCUCUUGCa-------CCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 100466 | 0.67 | 0.83521 |
Target: 5'- cGCUgcGCGaGUGcGAG-GCGcUGGGCCUg -3' miRNA: 3'- aUGAaaCGC-CAC-CUCuUGC-ACCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 30820 | 0.68 | 0.817961 |
Target: 5'- cGCgg-GCGGgaGGAGuuGCGUGGGCg- -3' miRNA: 3'- aUGaaaCGCCa-CCUCu-UGCACCCGga -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 49625 | 0.68 | 0.817961 |
Target: 5'- gUGCUgcGCGaGUGGGG---GUGGGCCg -3' miRNA: 3'- -AUGAaaCGC-CACCUCuugCACCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 130887 | 0.69 | 0.781422 |
Target: 5'- gGCg--GCGGUGGAGG-CG-GcGGCCg -3' miRNA: 3'- aUGaaaCGCCACCUCUuGCaC-CCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 10969 | 0.69 | 0.752521 |
Target: 5'- uUACggUGUGGUGGgugucacgguGGAGCGggccggGGGCCc -3' miRNA: 3'- -AUGaaACGCCACC----------UCUUGCa-----CCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 121663 | 0.7 | 0.712486 |
Target: 5'- gGCgg-GCGGagggGGGGAGCGagcGGGCCg -3' miRNA: 3'- aUGaaaCGCCa---CCUCUUGCa--CCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 66669 | 0.71 | 0.619153 |
Target: 5'- gGCg--GCGGUGGAcgccaugcGGACGUccgGGGCCUu -3' miRNA: 3'- aUGaaaCGCCACCU--------CUUGCA---CCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 19866 | 0.72 | 0.598303 |
Target: 5'- gGCUcgGggccuCGGUGGAGAGCGccaGGGCCa -3' miRNA: 3'- aUGAaaC-----GCCACCUCUUGCa--CCCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 45324 | 0.73 | 0.546758 |
Target: 5'- gGCUgggagggugGCGGUGGAGGacgggaGCGUGuGGCCc -3' miRNA: 3'- aUGAaa-------CGCCACCUCU------UGCAC-CCGGa -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 133152 | 0.75 | 0.448823 |
Target: 5'- gACUcgGCGGcGGcgcGGGCGUGGGCCUc -3' miRNA: 3'- aUGAaaCGCCaCCu--CUUGCACCCGGA- -5' |
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29392 | 5' | -55.3 | NC_006151.1 | + | 123465 | 1.05 | 0.004757 |
Target: 5'- cUACUUUGCGGUGGAGAACGUGGGCCUc -3' miRNA: 3'- -AUGAAACGCCACCUCUUGCACCCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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