miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 84625 0.67 0.879942
Target:  5'- -cGCGGCCGCCGCGgcgcUGgacaacgCCAUGgCCGc -3'
miRNA:   3'- gaUGCUGGUGGUGU----ACa------GGUGCgGGU- -5'
29393 3' -55.7 NC_006151.1 + 73787 0.67 0.879942
Target:  5'- -gGCGGCgGCgCGCAccUCgGCGCCCAc -3'
miRNA:   3'- gaUGCUGgUG-GUGUacAGgUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 69433 0.67 0.879942
Target:  5'- -gGCGgcGCCGCCGCc-GUUCGCGUCCu -3'
miRNA:   3'- gaUGC--UGGUGGUGuaCAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 68789 0.67 0.872717
Target:  5'- gUGCG-CCGCCGCGgccGUCauCAgGCCCGa -3'
miRNA:   3'- gAUGCuGGUGGUGUa--CAG--GUgCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 78740 0.67 0.872717
Target:  5'- gCUGCGGCCcacguCCGCc-GUCUGCGCCgAg -3'
miRNA:   3'- -GAUGCUGGu----GGUGuaCAGGUGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 132171 0.67 0.872717
Target:  5'- -cGCGGCCGgCACcgG--CGCGCCCGa -3'
miRNA:   3'- gaUGCUGGUgGUGuaCagGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 50614 0.67 0.872717
Target:  5'- -cGCG-CCGCCGCGgcagcGUgCACGCCUc -3'
miRNA:   3'- gaUGCuGGUGGUGUa----CAgGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 121773 0.67 0.871983
Target:  5'- gCUGCGACC-CCGCGgugGUgCGCGagcuggcCCCAc -3'
miRNA:   3'- -GAUGCUGGuGGUGUa--CAgGUGC-------GGGU- -5'
29393 3' -55.7 NC_006151.1 + 37566 0.67 0.871983
Target:  5'- -cGgGGCCGCCGgcgaggcCAUGUCCugGCUg- -3'
miRNA:   3'- gaUgCUGGUGGU-------GUACAGGugCGGgu -5'
29393 3' -55.7 NC_006151.1 + 93606 0.67 0.865275
Target:  5'- -gAUGGCCugCAgCAgccgGUCCGCGCUg- -3'
miRNA:   3'- gaUGCUGGugGU-GUa---CAGGUGCGGgu -5'
29393 3' -55.7 NC_006151.1 + 39843 0.67 0.865275
Target:  5'- cCUGCGGCCGCCGgGg--CCuCGCCgAg -3'
miRNA:   3'- -GAUGCUGGUGGUgUacaGGuGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 19622 0.67 0.865275
Target:  5'- --cCGGCCACCACGgcgCCGuCGCCg- -3'
miRNA:   3'- gauGCUGGUGGUGUacaGGU-GCGGgu -5'
29393 3' -55.7 NC_006151.1 + 5702 0.67 0.857621
Target:  5'- gCUGCGGCCACCGCugcuggcUGUgCUggugGCGCCgGg -3'
miRNA:   3'- -GAUGCUGGUGGUGu------ACA-GG----UGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 82388 0.67 0.857621
Target:  5'- --uCGAagGCCACGaGcUCCGCGCCCGa -3'
miRNA:   3'- gauGCUggUGGUGUaC-AGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 101837 0.67 0.857621
Target:  5'- -gGCGGCCGCCGCc---CC-CGCCCc -3'
miRNA:   3'- gaUGCUGGUGGUGuacaGGuGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 119059 0.67 0.857621
Target:  5'- -cGCGGCCGCCucCGcGggCGCGCCCGu -3'
miRNA:   3'- gaUGCUGGUGGu-GUaCagGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 135468 0.67 0.857621
Target:  5'- gUGCGcGCCA--GCGUGUCCGCGCgggCCAg -3'
miRNA:   3'- gAUGC-UGGUggUGUACAGGUGCG---GGU- -5'
29393 3' -55.7 NC_006151.1 + 62435 0.67 0.84976
Target:  5'- --uCGugCGCCug--GUCCGCGCCUg -3'
miRNA:   3'- gauGCugGUGGuguaCAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 49122 0.67 0.84976
Target:  5'- -gGCGACgUACCcgACGcUGcCCGCGCCCGc -3'
miRNA:   3'- gaUGCUG-GUGG--UGU-ACaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 123344 0.67 0.84976
Target:  5'- -aGCG-CCACCcCGUGgacgCCGCGCUCc -3'
miRNA:   3'- gaUGCuGGUGGuGUACa---GGUGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.