miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 6999 0.66 0.906573
Target:  5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3'
miRNA:   3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5'
29393 3' -55.7 NC_006151.1 + 131242 0.66 0.900263
Target:  5'- --uCGGCCGCCACGUacagcuccccGUCggaccaCGCGCCCc -3'
miRNA:   3'- gauGCUGGUGGUGUA----------CAG------GUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 39793 0.66 0.900263
Target:  5'- -cGCGGCCaACCGCuggggGcUCgGCGCCCc -3'
miRNA:   3'- gaUGCUGG-UGGUGua---C-AGgUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 1172 0.66 0.900263
Target:  5'- -cGgGACCACCaACAccGUCCACcuCCCAc -3'
miRNA:   3'- gaUgCUGGUGG-UGUa-CAGGUGc-GGGU- -5'
29393 3' -55.7 NC_006151.1 + 83471 0.66 0.900263
Target:  5'- ---aGGCCGCCGCGcugaUGUCCccgacgaugaaGCGCgCCAg -3'
miRNA:   3'- gaugCUGGUGGUGU----ACAGG-----------UGCG-GGU- -5'
29393 3' -55.7 NC_006151.1 + 115676 0.66 0.894384
Target:  5'- --gUGGCCGCCACGgggaggcagGggagcagcccguuggCCACGCCCGu -3'
miRNA:   3'- gauGCUGGUGGUGUa--------Ca--------------GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 115640 0.66 0.89372
Target:  5'- --gUGGCCACCAgCAUGU-CGCGgCCGa -3'
miRNA:   3'- gauGCUGGUGGU-GUACAgGUGCgGGU- -5'
29393 3' -55.7 NC_006151.1 + 37176 0.66 0.89372
Target:  5'- -gGCGcCCGCCGCGgccCCGCgGCCCu -3'
miRNA:   3'- gaUGCuGGUGGUGUacaGGUG-CGGGu -5'
29393 3' -55.7 NC_006151.1 + 86832 0.66 0.89372
Target:  5'- gUGCGGCCAUgGCAg--CCccgccgagcgcaGCGCCCGg -3'
miRNA:   3'- gAUGCUGGUGgUGUacaGG------------UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 92202 0.66 0.89372
Target:  5'- -gACGcGCCGCCGCGg--CCGCGCUgGa -3'
miRNA:   3'- gaUGC-UGGUGGUGUacaGGUGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 50104 0.66 0.89372
Target:  5'- -cGCGAUCAgcuccgguCCGCG-GUgCGCGCCCGa -3'
miRNA:   3'- gaUGCUGGU--------GGUGUaCAgGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 57106 0.66 0.89372
Target:  5'- -cGCGAgCAgCGCGcGccgCCGCGCCCGg -3'
miRNA:   3'- gaUGCUgGUgGUGUaCa--GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 58691 0.66 0.89372
Target:  5'- gUGCGcGCCgcGCCACAgcgccggGUCCgccaGCGCCCc -3'
miRNA:   3'- gAUGC-UGG--UGGUGUa------CAGG----UGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 85446 0.66 0.886944
Target:  5'- -cGCGGCCGCCuuCcUGggCCGCGgCCAg -3'
miRNA:   3'- gaUGCUGGUGGu-GuACa-GGUGCgGGU- -5'
29393 3' -55.7 NC_006151.1 + 122103 0.66 0.886944
Target:  5'- aCUACuGCCACCugA---UCACGCCCc -3'
miRNA:   3'- -GAUGcUGGUGGugUacaGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 8298 0.66 0.886944
Target:  5'- -cGCGGgCGCCGC--GUCC-CGCCCc -3'
miRNA:   3'- gaUGCUgGUGGUGuaCAGGuGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 38775 0.66 0.886944
Target:  5'- -gACGACCGgcuccggcgcCCGCucggGcCCAUGCCCGa -3'
miRNA:   3'- gaUGCUGGU----------GGUGua--CaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 138738 0.66 0.886944
Target:  5'- gUACG-CgCGCCGCGacUG-CCGCGCCUAc -3'
miRNA:   3'- gAUGCuG-GUGGUGU--ACaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 29210 0.67 0.88277
Target:  5'- -cGCGGCgggguggggauggguCACCGCcgGgucggCCGCGCCCc -3'
miRNA:   3'- gaUGCUG---------------GUGGUGuaCa----GGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 84625 0.67 0.879942
Target:  5'- -cGCGGCCGCCGCGgcgcUGgacaacgCCAUGgCCGc -3'
miRNA:   3'- gaUGCUGGUGGUGU----ACa------GGUGCgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.