miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 85021 0.73 0.53924
Target:  5'- -cGCGACgGCCGCAUGUC-GCGCaCCu -3'
miRNA:   3'- gaUGCUGgUGGUGUACAGgUGCG-GGu -5'
29393 3' -55.7 NC_006151.1 + 75283 0.73 0.549251
Target:  5'- -aGCG-CCGCCAgCGUggcGUCCACGUCCAg -3'
miRNA:   3'- gaUGCuGGUGGU-GUA---CAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 105604 0.73 0.549251
Target:  5'- -aGCGGCUGCCGCGgugGaUCC-CGCCCAa -3'
miRNA:   3'- gaUGCUGGUGGUGUa--C-AGGuGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 65375 0.73 0.559319
Target:  5'- -gGCGugCACCACGUGcCCcggGCGCgCCGu -3'
miRNA:   3'- gaUGCugGUGGUGUACaGG---UGCG-GGU- -5'
29393 3' -55.7 NC_006151.1 + 77217 0.72 0.589804
Target:  5'- -cGCG-CCGCCGCGUGUgUGCGCCgGg -3'
miRNA:   3'- gaUGCuGGUGGUGUACAgGUGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 132290 0.72 0.589804
Target:  5'- cCUG-GGCCACCACcugGUCCGCGUgCAg -3'
miRNA:   3'- -GAUgCUGGUGGUGua-CAGGUGCGgGU- -5'
29393 3' -55.7 NC_006151.1 + 1085 0.72 0.620566
Target:  5'- cCU-CGACCACCGCAggaccaccaucGUCCAacuccCGCCCGg -3'
miRNA:   3'- -GAuGCUGGUGGUGUa----------CAGGU-----GCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 106914 0.72 0.620566
Target:  5'- gCUGC-ACCGCgGCGUGUCCACGgaCCu -3'
miRNA:   3'- -GAUGcUGGUGgUGUACAGGUGCg-GGu -5'
29393 3' -55.7 NC_006151.1 + 87510 0.72 0.620566
Target:  5'- ---aGGCCGCCGCcccggCCGCGCCCGc -3'
miRNA:   3'- gaugCUGGUGGUGuaca-GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 102361 0.72 0.620566
Target:  5'- --cCGGCgACgACGcGUCCGCGCCCGu -3'
miRNA:   3'- gauGCUGgUGgUGUaCAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 46976 0.71 0.630848
Target:  5'- gCUGCGGCCGCCGCcgcUCC-UGCCCc -3'
miRNA:   3'- -GAUGCUGGUGGUGuacAGGuGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 69754 0.71 0.630848
Target:  5'- -cGCGACCGCCGgGg--CCACGCgCCGc -3'
miRNA:   3'- gaUGCUGGUGGUgUacaGGUGCG-GGU- -5'
29393 3' -55.7 NC_006151.1 + 31188 0.71 0.641131
Target:  5'- -cACGGuCCGCCGCAcagUGUggcCCGCGUCCAg -3'
miRNA:   3'- gaUGCU-GGUGGUGU---ACA---GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 137703 0.71 0.651407
Target:  5'- ---gGGCUuCCGCGUGUgCACGCCCu -3'
miRNA:   3'- gaugCUGGuGGUGUACAgGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 77710 0.71 0.651407
Target:  5'- -cACGACCGCCAgCAgGaCCGCGUCCu -3'
miRNA:   3'- gaUGCUGGUGGU-GUaCaGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 50717 0.71 0.661667
Target:  5'- -gACGGCCGCCcCGgcgGUCCAgcUGCCCc -3'
miRNA:   3'- gaUGCUGGUGGuGUa--CAGGU--GCGGGu -5'
29393 3' -55.7 NC_006151.1 + 73970 0.71 0.671903
Target:  5'- --gUGGCCACCGuggcCAUGcCCGCGUCCGg -3'
miRNA:   3'- gauGCUGGUGGU----GUACaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 108011 0.71 0.682107
Target:  5'- -cGCcGCCGCCACca--CCGCGCCCAa -3'
miRNA:   3'- gaUGcUGGUGGUGuacaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 51324 0.7 0.690241
Target:  5'- gUACGAgCACCGCuccggcuccccGUCCACGgCCAg -3'
miRNA:   3'- gAUGCUgGUGGUGua---------CAGGUGCgGGU- -5'
29393 3' -55.7 NC_006151.1 + 100578 0.7 0.702381
Target:  5'- cCUGCaGGCCGCCACc-GUCCuGCgGCCCGu -3'
miRNA:   3'- -GAUG-CUGGUGGUGuaCAGG-UG-CGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.