miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 122840 1.08 0.003228
Target:  5'- gCUACGACCACCACAUGUCCACGCCCAu -3'
miRNA:   3'- -GAUGCUGGUGGUGUACAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 111551 0.83 0.149511
Target:  5'- -cGCGcaGCgGCCGCGUGUCCACGCCCc -3'
miRNA:   3'- gaUGC--UGgUGGUGUACAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 73397 0.81 0.212464
Target:  5'- -cGCGGCCGCCGCGUacgcggccgugaaGcCCACGCCCAg -3'
miRNA:   3'- gaUGCUGGUGGUGUA-------------CaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 99518 0.8 0.218316
Target:  5'- gUGCG-CCACUGCAUGgcgCCGCGCCCGc -3'
miRNA:   3'- gAUGCuGGUGGUGUACa--GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 114212 0.78 0.298294
Target:  5'- uCUACGAgUACCGCGUGuUCCugGCCUc -3'
miRNA:   3'- -GAUGCUgGUGGUGUAC-AGGugCGGGu -5'
29393 3' -55.7 NC_006151.1 + 43073 0.76 0.382314
Target:  5'- -cGCcACCGCCGCGUGUCCGCuCCCc -3'
miRNA:   3'- gaUGcUGGUGGUGUACAGGUGcGGGu -5'
29393 3' -55.7 NC_006151.1 + 99878 0.75 0.416537
Target:  5'- cCUACGACCGCCGCGcgGaCCugGCgCAg -3'
miRNA:   3'- -GAUGCUGGUGGUGUa-CaGGugCGgGU- -5'
29393 3' -55.7 NC_006151.1 + 14816 0.75 0.416537
Target:  5'- --cCGAcCCACCGCGUccgCCGCGCCCAu -3'
miRNA:   3'- gauGCU-GGUGGUGUAca-GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 77172 0.75 0.416537
Target:  5'- -cGCGuCCGCCGCcgcGUCCACGUCCGc -3'
miRNA:   3'- gaUGCuGGUGGUGua-CAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 50686 0.75 0.425381
Target:  5'- -cGCG-CCGCCGCGgcagcGUCCACGCCUc -3'
miRNA:   3'- gaUGCuGGUGGUGUa----CAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 39416 0.75 0.425381
Target:  5'- -gGgGACUACCACGUcuacGUCCGCGUCCGc -3'
miRNA:   3'- gaUgCUGGUGGUGUA----CAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 68394 0.75 0.434336
Target:  5'- -cGCGGCCACCucCAUGgCgCGCGCCCGc -3'
miRNA:   3'- gaUGCUGGUGGu-GUACaG-GUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 132842 0.75 0.448887
Target:  5'- -gACGGCCACCACGggcggccggcccgGggCCGCGCCCc -3'
miRNA:   3'- gaUGCUGGUGGUGUa------------Ca-GGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 92263 0.75 0.452567
Target:  5'- uCUGCGucaaccucauCCGCCACAUGggCUACGCCUAc -3'
miRNA:   3'- -GAUGCu---------GGUGGUGUACa-GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 137190 0.74 0.499877
Target:  5'- gUACGugaGCCGCCACgagGUGUUCaACGCCCGg -3'
miRNA:   3'- gAUGC---UGGUGGUG---UACAGG-UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 58754 0.74 0.509605
Target:  5'- -cGCGGCCACCGCGg--CCGCcgaGCCCGu -3'
miRNA:   3'- gaUGCUGGUGGUGUacaGGUG---CGGGU- -5'
29393 3' -55.7 NC_006151.1 + 67553 0.73 0.519412
Target:  5'- --uUGACCACCACGUGgcgCCcgcggGCGUCCAg -3'
miRNA:   3'- gauGCUGGUGGUGUACa--GG-----UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 95141 0.73 0.5283
Target:  5'- -cGCG-CCGCCGggucggcCAUGUCCAUGUCCAg -3'
miRNA:   3'- gaUGCuGGUGGU-------GUACAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 108308 0.73 0.529292
Target:  5'- -gGCGACCcCCACGccccCCGCGCCCGg -3'
miRNA:   3'- gaUGCUGGuGGUGUaca-GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 85021 0.73 0.53924
Target:  5'- -cGCGACgGCCGCAUGUC-GCGCaCCu -3'
miRNA:   3'- gaUGCUGgUGGUGUACAGgUGCG-GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.