miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 1085 0.72 0.620566
Target:  5'- cCU-CGACCACCGCAggaccaccaucGUCCAacuccCGCCCGg -3'
miRNA:   3'- -GAuGCUGGUGGUGUa----------CAGGU-----GCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 1172 0.66 0.900263
Target:  5'- -cGgGACCACCaACAccGUCCACcuCCCAc -3'
miRNA:   3'- gaUgCUGGUGG-UGUa-CAGGUGc-GGGU- -5'
29393 3' -55.7 NC_006151.1 + 3109 0.68 0.819865
Target:  5'- ---aGGCCGCCGCGgcgcggGUCCcaggccgggcgcgggGCGCCCu -3'
miRNA:   3'- gaugCUGGUGGUGUa-----CAGG---------------UGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 5702 0.67 0.857621
Target:  5'- gCUGCGGCCACCGCugcuggcUGUgCUggugGCGCCgGg -3'
miRNA:   3'- -GAUGCUGGUGGUGu------ACA-GG----UGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 6918 0.66 0.906573
Target:  5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3'
miRNA:   3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5'
29393 3' -55.7 NC_006151.1 + 6999 0.66 0.906573
Target:  5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3'
miRNA:   3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5'
29393 3' -55.7 NC_006151.1 + 8298 0.66 0.886944
Target:  5'- -cGCGGgCGCCGC--GUCC-CGCCCc -3'
miRNA:   3'- gaUGCUgGUGGUGuaCAGGuGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 14816 0.75 0.416537
Target:  5'- --cCGAcCCACCGCGUccgCCGCGCCCAu -3'
miRNA:   3'- gauGCU-GGUGGUGUAca-GGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 17038 0.66 0.917906
Target:  5'- -gGCGACgAUCACGUccagggcGUCgGCGUCCGu -3'
miRNA:   3'- gaUGCUGgUGGUGUA-------CAGgUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 17077 0.68 0.807617
Target:  5'- ---gGGCCGCCGCcgGgucaggCgCGCGCCCGu -3'
miRNA:   3'- gaugCUGGUGGUGuaCa-----G-GUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 17252 0.66 0.912645
Target:  5'- -gAgGACCACUcCGUGUCCA-GCCgCGg -3'
miRNA:   3'- gaUgCUGGUGGuGUACAGGUgCGG-GU- -5'
29393 3' -55.7 NC_006151.1 + 18392 0.68 0.824159
Target:  5'- gUACGGCCccucguaGCCGC-UGUCCcCGCCgGg -3'
miRNA:   3'- gAUGCUGG-------UGGUGuACAGGuGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 19622 0.67 0.865275
Target:  5'- --cCGGCCACCACGgcgCCGuCGCCg- -3'
miRNA:   3'- gauGCUGGUGGUGUacaGGU-GCGGgu -5'
29393 3' -55.7 NC_006151.1 + 20153 0.69 0.780339
Target:  5'- -gGCGGCgCguggACCGCcgGgCCGCGCCCGg -3'
miRNA:   3'- gaUGCUG-G----UGGUGuaCaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 21696 0.68 0.825013
Target:  5'- -aACGGCgucaggaAUCGCAUcacGUCCACGCCCc -3'
miRNA:   3'- gaUGCUGg------UGGUGUA---CAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 21819 0.68 0.832614
Target:  5'- -aGCG-CCACCAUgaagucggugaggAUGUUCACGCCg- -3'
miRNA:   3'- gaUGCuGGUGGUG-------------UACAGGUGCGGgu -5'
29393 3' -55.7 NC_006151.1 + 22297 0.68 0.816399
Target:  5'- -cACGGCguCCAC--GUCCGCGCCgAg -3'
miRNA:   3'- gaUGCUGguGGUGuaCAGGUGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 24540 0.68 0.79596
Target:  5'- -cGCGGCCccgagguccccuagGCaCAcCGUGUCCACGUCCu -3'
miRNA:   3'- gaUGCUGG--------------UG-GU-GUACAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 29210 0.67 0.88277
Target:  5'- -cGCGGCgggguggggauggguCACCGCcgGgucggCCGCGCCCc -3'
miRNA:   3'- gaUGCUG---------------GUGGUGuaCa----GGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 31188 0.71 0.641131
Target:  5'- -cACGGuCCGCCGCAcagUGUggcCCGCGUCCAg -3'
miRNA:   3'- gaUGCU-GGUGGUGU---ACA---GGUGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.