miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 138981 0.7 0.742136
Target:  5'- -cGCGACgCGCCGCg---CCGCGCUCAg -3'
miRNA:   3'- gaUGCUG-GUGGUGuacaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 138738 0.66 0.886944
Target:  5'- gUACG-CgCGCCGCGacUG-CCGCGCCUAc -3'
miRNA:   3'- gAUGCuG-GUGGUGU--ACaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 137703 0.71 0.651407
Target:  5'- ---gGGCUuCCGCGUGUgCACGCCCu -3'
miRNA:   3'- gaugCUGGuGGUGUACAgGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 137632 0.68 0.825013
Target:  5'- -gGCG-CCuCCGCccucGUCCGCGCCCc -3'
miRNA:   3'- gaUGCuGGuGGUGua--CAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 137424 0.66 0.912645
Target:  5'- -cGCcGCCGCCGCGggGUCCGCcUCCGc -3'
miRNA:   3'- gaUGcUGGUGGUGUa-CAGGUGcGGGU- -5'
29393 3' -55.7 NC_006151.1 + 137190 0.74 0.499877
Target:  5'- gUACGugaGCCGCCACgagGUGUUCaACGCCCGg -3'
miRNA:   3'- gAUGC---UGGUGGUG---UACAGG-UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 136675 0.66 0.917331
Target:  5'- -cGCGGCCGCCGCcuucuuccgCCACGUgCGg -3'
miRNA:   3'- gaUGCUGGUGGUGuaca-----GGUGCGgGU- -5'
29393 3' -55.7 NC_006151.1 + 136021 0.66 0.918478
Target:  5'- -cGCGGCCcugACCAUG-GUCCucgagcagguGCGCCCGc -3'
miRNA:   3'- gaUGCUGG---UGGUGUaCAGG----------UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 135650 0.68 0.841701
Target:  5'- -gAUG-CCGCCcaGCAUGaUCCGCGUCCu -3'
miRNA:   3'- gaUGCuGGUGG--UGUAC-AGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 135468 0.67 0.857621
Target:  5'- gUGCGcGCCA--GCGUGUCCGCGCgggCCAg -3'
miRNA:   3'- gAUGC-UGGUggUGUACAGGUGCG---GGU- -5'
29393 3' -55.7 NC_006151.1 + 135386 0.68 0.816399
Target:  5'- -cGCGACCACgGC--GUCCAgGCCg- -3'
miRNA:   3'- gaUGCUGGUGgUGuaCAGGUgCGGgu -5'
29393 3' -55.7 NC_006151.1 + 135336 0.68 0.825013
Target:  5'- -aGCG-CCGCCaggcACGUGUCCGCGagCCGc -3'
miRNA:   3'- gaUGCuGGUGG----UGUACAGGUGCg-GGU- -5'
29393 3' -55.7 NC_006151.1 + 134478 0.69 0.770967
Target:  5'- -gACGGCCGCCACuggGcCUACGUCUu -3'
miRNA:   3'- gaUGCUGGUGGUGua-CaGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 132842 0.75 0.448887
Target:  5'- -gACGGCCACCACGggcggccggcccgGggCCGCGCCCc -3'
miRNA:   3'- gaUGCUGGUGGUGUa------------Ca-GGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 132543 0.69 0.76813
Target:  5'- -cACGGCCGCCACGUacGcgggcagcuccuccUCCACGgCCGg -3'
miRNA:   3'- gaUGCUGGUGGUGUA--C--------------AGGUGCgGGU- -5'
29393 3' -55.7 NC_006151.1 + 132290 0.72 0.589804
Target:  5'- cCUG-GGCCACCACcugGUCCGCGUgCAg -3'
miRNA:   3'- -GAUgCUGGUGGUGua-CAGGUGCGgGU- -5'
29393 3' -55.7 NC_006151.1 + 132171 0.67 0.872717
Target:  5'- -cGCGGCCGgCACcgG--CGCGCCCGa -3'
miRNA:   3'- gaUGCUGGUgGUGuaCagGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 131242 0.66 0.900263
Target:  5'- --uCGGCCGCCACGUacagcuccccGUCggaccaCGCGCCCc -3'
miRNA:   3'- gauGCUGGUGGUGUA----------CAG------GUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 128076 0.68 0.816399
Target:  5'- -gGCGACCGacaggaagCGCAUGUCccgCugGCCCGu -3'
miRNA:   3'- gaUGCUGGUg-------GUGUACAG---GugCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 123344 0.67 0.84976
Target:  5'- -aGCG-CCACCcCGUGgacgCCGCGCUCc -3'
miRNA:   3'- gaUGCuGGUGGuGUACa---GGUGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.