miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 3' -55.7 NC_006151.1 + 37176 0.66 0.89372
Target:  5'- -gGCGcCCGCCGCGgccCCGCgGCCCu -3'
miRNA:   3'- gaUGCuGGUGGUGUacaGGUG-CGGGu -5'
29393 3' -55.7 NC_006151.1 + 37566 0.67 0.871983
Target:  5'- -cGgGGCCGCCGgcgaggcCAUGUCCugGCUg- -3'
miRNA:   3'- gaUgCUGGUGGU-------GUACAGGugCGGgu -5'
29393 3' -55.7 NC_006151.1 + 38252 0.66 0.912645
Target:  5'- -cGCGGCCcucuucgccccgGCCaACGUGgCCGCGgCCCGg -3'
miRNA:   3'- gaUGCUGG------------UGG-UGUACaGGUGC-GGGU- -5'
29393 3' -55.7 NC_006151.1 + 38308 0.68 0.798673
Target:  5'- -cGCGGCCcgggcCCGCGgaGcCCGCGCCCGg -3'
miRNA:   3'- gaUGCUGGu----GGUGUa-CaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 38775 0.66 0.886944
Target:  5'- -gACGACCGgcuccggcgcCCGCucggGcCCAUGCCCGa -3'
miRNA:   3'- gaUGCUGGU----------GGUGua--CaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 39416 0.75 0.425381
Target:  5'- -gGgGACUACCACGUcuacGUCCGCGUCCGc -3'
miRNA:   3'- gaUgCUGGUGGUGUA----CAGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 39793 0.66 0.900263
Target:  5'- -cGCGGCCaACCGCuggggGcUCgGCGCCCc -3'
miRNA:   3'- gaUGCUGG-UGGUGua---C-AGgUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 39843 0.67 0.865275
Target:  5'- cCUGCGGCCGCCGgGg--CCuCGCCgAg -3'
miRNA:   3'- -GAUGCUGGUGGUgUacaGGuGCGGgU- -5'
29393 3' -55.7 NC_006151.1 + 43017 0.66 0.912645
Target:  5'- gCUugGcACCccuCCACAUcUCCucgaucGCGCCCAg -3'
miRNA:   3'- -GAugC-UGGu--GGUGUAcAGG------UGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 43073 0.76 0.382314
Target:  5'- -cGCcACCGCCGCGUGUCCGCuCCCc -3'
miRNA:   3'- gaUGcUGGUGGUGUACAGGUGcGGGu -5'
29393 3' -55.7 NC_006151.1 + 45730 0.7 0.73232
Target:  5'- -gACGACCACCGCcgagGcuUCCAgCGCCUg -3'
miRNA:   3'- gaUGCUGGUGGUGua--C--AGGU-GCGGGu -5'
29393 3' -55.7 NC_006151.1 + 46976 0.71 0.630848
Target:  5'- gCUGCGGCCGCCGCcgcUCC-UGCCCc -3'
miRNA:   3'- -GAUGCUGGUGGUGuacAGGuGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 49122 0.67 0.84976
Target:  5'- -gGCGACgUACCcgACGcUGcCCGCGCCCGc -3'
miRNA:   3'- gaUGCUG-GUGG--UGU-ACaGGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 50104 0.66 0.89372
Target:  5'- -cGCGAUCAgcuccgguCCGCG-GUgCGCGCCCGa -3'
miRNA:   3'- gaUGCUGGU--------GGUGUaCAgGUGCGGGU- -5'
29393 3' -55.7 NC_006151.1 + 50614 0.67 0.872717
Target:  5'- -cGCG-CCGCCGCGgcagcGUgCACGCCUc -3'
miRNA:   3'- gaUGCuGGUGGUGUa----CAgGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 50686 0.75 0.425381
Target:  5'- -cGCG-CCGCCGCGgcagcGUCCACGCCUc -3'
miRNA:   3'- gaUGCuGGUGGUGUa----CAGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 50717 0.71 0.661667
Target:  5'- -gACGGCCGCCcCGgcgGUCCAgcUGCCCc -3'
miRNA:   3'- gaUGCUGGUGGuGUa--CAGGU--GCGGGu -5'
29393 3' -55.7 NC_006151.1 + 50855 0.69 0.789578
Target:  5'- -gGCGGCCGCC-Cuc--CCGCGCCCc -3'
miRNA:   3'- gaUGCUGGUGGuGuacaGGUGCGGGu -5'
29393 3' -55.7 NC_006151.1 + 51324 0.7 0.690241
Target:  5'- gUACGAgCACCGCuccggcuccccGUCCACGgCCAg -3'
miRNA:   3'- gAUGCUgGUGGUGua---------CAGGUGCgGGU- -5'
29393 3' -55.7 NC_006151.1 + 57106 0.66 0.89372
Target:  5'- -cGCGAgCAgCGCGcGccgCCGCGCCCGg -3'
miRNA:   3'- gaUGCUgGUgGUGUaCa--GGUGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.