miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 28234 0.67 0.557055
Target:  5'- --gGGGgCCGGGCCgacGGGCCcauuGGCCGgGg -3'
miRNA:   3'- cgaCCUgGGCCUGG---CCCGG----UUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 4126 0.67 0.557055
Target:  5'- cCUGccgccGCUCGG-CCGGGCCGGCCcCGg -3'
miRNA:   3'- cGACc----UGGGCCuGGCCCGGUUGGcGC- -5'
29393 5' -62.8 NC_006151.1 + 4315 0.67 0.557055
Target:  5'- cGCgGGGCaCGcGGCCGGGCUgcgcGGCgGCGa -3'
miRNA:   3'- -CGaCCUGgGC-CUGGCCCGG----UUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 104902 0.67 0.557055
Target:  5'- uGgUGGACgCGGcGgCGGcGCgCGACCGCGa -3'
miRNA:   3'- -CgACCUGgGCC-UgGCC-CG-GUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 124060 0.67 0.557055
Target:  5'- cCUGGACgCgCGGAC--GGCCGugCGCGc -3'
miRNA:   3'- cGACCUG-G-GCCUGgcCCGGUugGCGC- -5'
29393 5' -62.8 NC_006151.1 + 59215 0.67 0.54755
Target:  5'- cGCgUGGGcCCCGGgaacgucugccgGCUGcGGCCGACgCGCa -3'
miRNA:   3'- -CG-ACCU-GGGCC------------UGGC-CCGGUUG-GCGc -5'
29393 5' -62.8 NC_006151.1 + 60288 0.67 0.54755
Target:  5'- -gUGGACUgguagaCGGAggccauguCCGGGCCGugCGCc -3'
miRNA:   3'- cgACCUGG------GCCU--------GGCCCGGUugGCGc -5'
29393 5' -62.8 NC_006151.1 + 66131 0.67 0.54755
Target:  5'- aCUccACCCGGGC--GGCCAGCCGCa -3'
miRNA:   3'- cGAccUGGGCCUGgcCCGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 91755 0.67 0.54755
Target:  5'- aGC-GGGCUCGGG-CGGGCgGugUGCGc -3'
miRNA:   3'- -CGaCCUGGGCCUgGCCCGgUugGCGC- -5'
29393 5' -62.8 NC_006151.1 + 106095 0.67 0.54755
Target:  5'- --gGGACUCGGcgGCCaaGGCCG-CCGCGg -3'
miRNA:   3'- cgaCCUGGGCC--UGGc-CCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 127372 0.67 0.54755
Target:  5'- gGCggGGACCgCGGggguggcggggGCCGcGGCCGAgucgacgggagcCCGCGg -3'
miRNA:   3'- -CGa-CCUGG-GCC-----------UGGC-CCGGUU------------GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 19866 0.67 0.54755
Target:  5'- gGCUcgGGGCCuCGGuggagagcGCCaGGGCCAGCaGCGc -3'
miRNA:   3'- -CGA--CCUGG-GCC--------UGG-CCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 50332 0.67 0.54755
Target:  5'- --cGGccGCCCGGcgccugGCCGcGGCCucccGCCGCGu -3'
miRNA:   3'- cgaCC--UGGGCC------UGGC-CCGGu---UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 141973 0.67 0.54755
Target:  5'- uGCgGGAUCCGG-UCGGGCgGcCCGgGa -3'
miRNA:   3'- -CGaCCUGGGCCuGGCCCGgUuGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 122330 0.67 0.546603
Target:  5'- cGCgUGGACCCcgaGGA-CGuGGCCAagaaccuGCCGCa -3'
miRNA:   3'- -CG-ACCUGGG---CCUgGC-CCGGU-------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 39507 0.67 0.538098
Target:  5'- uGCUGGACUCuagcuccaucguGGGCCcGGCCugcuucgcCCGCGu -3'
miRNA:   3'- -CGACCUGGG------------CCUGGcCCGGuu------GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 20691 0.67 0.538098
Target:  5'- cGC-GGACCCGcagcacguacGACCccgcguccggcgGGGCCGGgCGCGa -3'
miRNA:   3'- -CGaCCUGGGC----------CUGG------------CCCGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 57990 0.67 0.538098
Target:  5'- aGCgc-GCCgCGGACCGccuccGGCgCGGCCGCGg -3'
miRNA:   3'- -CGaccUGG-GCCUGGC-----CCG-GUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 35224 0.67 0.538098
Target:  5'- aUUGG-CCCGGgcgaGCCGagauGGCCG-CCGCGg -3'
miRNA:   3'- cGACCuGGGCC----UGGC----CCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 130704 0.67 0.537156
Target:  5'- --gGGGCCCGacggggcGGCCcggGGGCCcgcgcGGCCGCGg -3'
miRNA:   3'- cgaCCUGGGC-------CUGG---CCCGG-----UUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.