miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 86238 0.67 0.585826
Target:  5'- cGCUGcGACaUCGGcGCCGuGCUGGCCGUGg -3'
miRNA:   3'- -CGAC-CUG-GGCC-UGGCcCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 101100 0.67 0.585826
Target:  5'- --gGGGCCCGGGUCGGGCgucucguGCCuGCGc -3'
miRNA:   3'- cgaCCUGGGCCUGGCCCGgu-----UGG-CGC- -5'
29393 5' -62.8 NC_006151.1 + 122647 0.67 0.585826
Target:  5'- cCUGGAcgaCCUGGAgCGGcGCgAgcGCCGCGc -3'
miRNA:   3'- cGACCU---GGGCCUgGCC-CGgU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 133457 0.67 0.585826
Target:  5'- cUUGGcCCCGG-UCGaGGCCcgcgaggcGGCCGCGg -3'
miRNA:   3'- cGACCuGGGCCuGGC-CCGG--------UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 22523 0.67 0.585826
Target:  5'- cGCgggGGAgUCGGGCgGGGCCGGgUcagGCGg -3'
miRNA:   3'- -CGa--CCUgGGCCUGgCCCGGUUgG---CGC- -5'
29393 5' -62.8 NC_006151.1 + 2178 0.67 0.576198
Target:  5'- gGCcGGcCCCGGcgcCCGaGGCCc-CCGCGg -3'
miRNA:   3'- -CGaCCuGGGCCu--GGC-CCGGuuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 31220 0.67 0.576198
Target:  5'- gGCcGGGCCCccGGCC-GGCCGGCCcgGCGa -3'
miRNA:   3'- -CGaCCUGGGc-CUGGcCCGGUUGG--CGC- -5'
29393 5' -62.8 NC_006151.1 + 34591 0.67 0.576198
Target:  5'- gGCUGGGgcgccCUCGGAgCGcGcGCCGAgCGCGa -3'
miRNA:   3'- -CGACCU-----GGGCCUgGC-C-CGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 117823 0.67 0.576198
Target:  5'- cGCUuuaaGACCCGGcCgGGGCgGGCCGg- -3'
miRNA:   3'- -CGAc---CUGGGCCuGgCCCGgUUGGCgc -5'
29393 5' -62.8 NC_006151.1 + 13154 0.67 0.576198
Target:  5'- uGC-GGuCCCGGAaauuuCCGGGaCGgucGCCGCGg -3'
miRNA:   3'- -CGaCCuGGGCCU-----GGCCCgGU---UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 17056 0.67 0.576198
Target:  5'- gGCgucGGcguccgucaGCCCGGgccgccGCCGGGUCAGgCGCGc -3'
miRNA:   3'- -CGa--CC---------UGGGCC------UGGCCCGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 39372 0.67 0.566605
Target:  5'- uGCUGGACaCCaucgaGGACUGgcccgcggacGGCCcGGCCGUGg -3'
miRNA:   3'- -CGACCUG-GG-----CCUGGC----------CCGG-UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 45409 0.67 0.566605
Target:  5'- uGgUGGugCCGGugUguuguGGGCCGGggguUCGCGg -3'
miRNA:   3'- -CgACCugGGCCugG-----CCCGGUU----GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 131592 0.67 0.566605
Target:  5'- cGCUGcGgcaaauGCCCccccuCCGGGCCGGcCCGCGg -3'
miRNA:   3'- -CGAC-C------UGGGccu--GGCCCGGUU-GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 28482 0.67 0.566605
Target:  5'- cGCUGGAugcgugccaaguCCCGGGaaGGGggcgguCCGGcCCGCGg -3'
miRNA:   3'- -CGACCU------------GGGCCUggCCC------GGUU-GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 29217 0.67 0.566605
Target:  5'- gGgUGGGgaUGGgucaccGCCGGGUCGGCCGCGc -3'
miRNA:   3'- -CgACCUggGCC------UGGCCCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 37364 0.67 0.565648
Target:  5'- cCUGG-CCCGGcuCCGacccuccGGCCGacgGCCGCGu -3'
miRNA:   3'- cGACCuGGGCCu-GGC-------CCGGU---UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 85137 0.67 0.56087
Target:  5'- cCUGcACCUGGugCaccgcgugcggcaggGGGCCGgcGCCGCGg -3'
miRNA:   3'- cGACcUGGGCCugG---------------CCCGGU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 76831 0.67 0.56087
Target:  5'- -gUGGcgGCCCGcGuCCGggcgacguacaggaaGGCCAGCCGCGc -3'
miRNA:   3'- cgACC--UGGGC-CuGGC---------------CCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 104902 0.67 0.557055
Target:  5'- uGgUGGACgCGGcGgCGGcGCgCGACCGCGa -3'
miRNA:   3'- -CgACCUGgGCC-UgGCC-CG-GUUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.