miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 31682 0.72 0.301648
Target:  5'- --aGGGCCgGGccGCCGaGCCGGCCGCGc -3'
miRNA:   3'- cgaCCUGGgCC--UGGCcCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 38279 0.72 0.308327
Target:  5'- gGCcGcGGCCCGGcucGCCGaGGCC-GCCGCGc -3'
miRNA:   3'- -CGaC-CUGGGCC---UGGC-CCGGuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 19282 0.72 0.308327
Target:  5'- cGCgGGGCCC--ACCgGGGCCAGCgGCGc -3'
miRNA:   3'- -CGaCCUGGGccUGG-CCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 40074 0.72 0.308327
Target:  5'- cGCggGGGCCuCGGgcGCCgGGGCCGGCCccgGCGa -3'
miRNA:   3'- -CGa-CCUGG-GCC--UGG-CCCGGUUGG---CGC- -5'
29393 5' -62.8 NC_006151.1 + 100202 0.72 0.311031
Target:  5'- uGCUGGACUcgauggccacggccgCGGgcGCCGuGGCCGAgCGCGu -3'
miRNA:   3'- -CGACCUGG---------------GCC--UGGC-CCGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 3839 0.72 0.315119
Target:  5'- gGCUGGaggGCCCGGAgCCGGGgaGGCCGg- -3'
miRNA:   3'- -CGACC---UGGGCCU-GGCCCggUUGGCgc -5'
29393 5' -62.8 NC_006151.1 + 27361 0.72 0.315119
Target:  5'- gGCcgGGGCCCGGG-CGGGUCGACgGgCGa -3'
miRNA:   3'- -CGa-CCUGGGCCUgGCCCGGUUGgC-GC- -5'
29393 5' -62.8 NC_006151.1 + 54708 0.72 0.317868
Target:  5'- uGCUGGGCCagggccuggacgaggUGGccgagcucGCCGaGGCCAugCGCGg -3'
miRNA:   3'- -CGACCUGG---------------GCC--------UGGC-CCGGUugGCGC- -5'
29393 5' -62.8 NC_006151.1 + 82608 0.71 0.322024
Target:  5'- gGgUGGGCCCGcGCgCGGGC--GCCGCGg -3'
miRNA:   3'- -CgACCUGGGCcUG-GCCCGguUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 49846 0.71 0.322024
Target:  5'- gGCggcGGGCCCGcGCUGGGCgCAGCaCGUGg -3'
miRNA:   3'- -CGa--CCUGGGCcUGGCCCG-GUUG-GCGC- -5'
29393 5' -62.8 NC_006151.1 + 2854 0.71 0.329041
Target:  5'- -gUGGuaguCCCccacGGCCGGGCCGuCCGCGg -3'
miRNA:   3'- cgACCu---GGGc---CUGGCCCGGUuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 8177 0.71 0.329041
Target:  5'- -aUGGACCuCGGGCCGGGaCC--CCGgGg -3'
miRNA:   3'- cgACCUGG-GCCUGGCCC-GGuuGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 76915 0.71 0.329041
Target:  5'- aGC-GGcAUCCGGucCCGGGCCAcguuCCGCGc -3'
miRNA:   3'- -CGaCC-UGGGCCu-GGCCCGGUu---GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 23901 0.71 0.329041
Target:  5'- gGCUGGGCgUCGGuCgCGGGCCcgacgGGCCGCc -3'
miRNA:   3'- -CGACCUG-GGCCuG-GCCCGG-----UUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 8223 0.71 0.334019
Target:  5'- gGCcGGGuCCCcuucccggcggggaGGGCCGGGCCGGCgCGCc -3'
miRNA:   3'- -CGaCCU-GGG--------------CCUGGCCCGGUUG-GCGc -5'
29393 5' -62.8 NC_006151.1 + 129539 0.71 0.33617
Target:  5'- --gGGGCCCgGGGCCGccGUCAACCGCa -3'
miRNA:   3'- cgaCCUGGG-CCUGGCc-CGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 5637 0.71 0.33617
Target:  5'- cGCcGGGCgCCGaGACCGGcCCGGCgGCGg -3'
miRNA:   3'- -CGaCCUG-GGC-CUGGCCcGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 135087 0.71 0.33617
Target:  5'- gGCggGGGCggCgGGGCCGGGCgGGCgGCGg -3'
miRNA:   3'- -CGa-CCUG--GgCCUGGCCCGgUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 21543 0.71 0.33617
Target:  5'- gGCcgGGGCCgGGGCCuGGGCCu-CgGCGa -3'
miRNA:   3'- -CGa-CCUGGgCCUGG-CCCGGuuGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 112039 0.71 0.33617
Target:  5'- aGCUGGGgCCGG--CGGGCgGGCgGCGg -3'
miRNA:   3'- -CGACCUgGGCCugGCCCGgUUGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.