miRNA display CGI


Results 21 - 40 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 118223 0.74 0.219668
Target:  5'- gGCgGGcGCCCGGAccaCCGGGCuCGGCgGCGg -3'
miRNA:   3'- -CGaCC-UGGGCCU---GGCCCG-GUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 132642 0.74 0.219668
Target:  5'- --cGGcGCCCGGACCuGGGCCGccaccucguCCGCGg -3'
miRNA:   3'- cgaCC-UGGGCCUGG-CCCGGUu--------GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 117251 0.74 0.230098
Target:  5'- gGC-GGGCCCGaGGCgCGGGCCGcgcgcgGCCGCc -3'
miRNA:   3'- -CGaCCUGGGC-CUG-GCCCGGU------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 79641 0.74 0.234927
Target:  5'- cGCUGGAuccCCCGGACCaggaucgucguGGGaCCGccggaucgucgccGCCGCGg -3'
miRNA:   3'- -CGACCU---GGGCCUGG-----------CCC-GGU-------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 78679 0.74 0.240944
Target:  5'- uGCUGGACgggcucuacgCCGGcCgGGGCCucgucGCCGCGa -3'
miRNA:   3'- -CGACCUG----------GGCCuGgCCCGGu----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 14841 0.73 0.246525
Target:  5'- -aUGGACCgGGuCUGGGCCGACUGg- -3'
miRNA:   3'- cgACCUGGgCCuGGCCCGGUUGGCgc -5'
29393 5' -62.8 NC_006151.1 + 70757 0.73 0.252213
Target:  5'- -gUGGACCCGG-CCuucacGGCCAACgCGCGc -3'
miRNA:   3'- cgACCUGGGCCuGGc----CCGGUUG-GCGC- -5'
29393 5' -62.8 NC_006151.1 + 135161 0.73 0.258008
Target:  5'- gGCgGGcgcgGCCCGGACgGGcGCCGGCUGCc -3'
miRNA:   3'- -CGaCC----UGGGCCUGgCC-CGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 134765 0.73 0.258008
Target:  5'- cGCgGGGCCCGcGGCuucggcuccaCGGGCCugugaGGCCGCGg -3'
miRNA:   3'- -CGaCCUGGGC-CUG----------GCCCGG-----UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 119948 0.73 0.263912
Target:  5'- cGCUGGACCCGuACuCGGGCgcGCUGUGc -3'
miRNA:   3'- -CGACCUGGGCcUG-GCCCGguUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 1911 0.73 0.263912
Target:  5'- --aGGACgaGGACCGGGCCGAggGCGa -3'
miRNA:   3'- cgaCCUGggCCUGGCCCGGUUggCGC- -5'
29393 5' -62.8 NC_006151.1 + 121273 0.73 0.268713
Target:  5'- cGCUGGcggagaucaaCGGGCgCGuGGCCGACCGCGa -3'
miRNA:   3'- -CGACCugg-------GCCUG-GC-CCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 21351 0.73 0.269924
Target:  5'- gGCUGGAacggcuCCgCGGGCUGcGGCCAcCCGCu -3'
miRNA:   3'- -CGACCU------GG-GCCUGGC-CCGGUuGGCGc -5'
29393 5' -62.8 NC_006151.1 + 101441 0.72 0.28228
Target:  5'- cGCUGGucguggucggcGCCgUGGGCCuGGGCCucuaccGCCGCGg -3'
miRNA:   3'- -CGACC-----------UGG-GCCUGG-CCCGGu-----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 39225 0.72 0.28228
Target:  5'- cCUGGGCCgggaacUGGACCGGGCgccccgacauCGGCCGCc -3'
miRNA:   3'- cGACCUGG------GCCUGGCCCG----------GUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 39445 0.72 0.28228
Target:  5'- cCUGGACCCGGccgcccagugcGCCGugcgcuGGCCcggguGCCGCGa -3'
miRNA:   3'- cGACCUGGGCC-----------UGGC------CCGGu----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 70991 0.72 0.284805
Target:  5'- --aGGACUCGG-CCGuGGCCAucgugggcgccaugcGCCGCGa -3'
miRNA:   3'- cgaCCUGGGCCuGGC-CCGGU---------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 13732 0.72 0.288624
Target:  5'- gGCcGGuCCCGGACgcccgucccgCGGGCCgGACCGCc -3'
miRNA:   3'- -CGaCCuGGGCCUG----------GCCCGG-UUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 13451 0.72 0.288624
Target:  5'- gGCcGGuCCCGGACgcccgucccgCGGGCCgGACCGCc -3'
miRNA:   3'- -CGaCCuGGGCCUG----------GCCCGG-UUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 37739 0.72 0.301648
Target:  5'- --aGGACCCGcuCUGGGCCcuGCCGCa -3'
miRNA:   3'- cgaCCUGGGCcuGGCCCGGu-UGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.