miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 28833 0.66 0.623609
Target:  5'- uGC-GGGCCCcggGGACgCGGGCCcggcucccccauuGGCCgGCGc -3'
miRNA:   3'- -CGaCCUGGG---CCUG-GCCCGG-------------UUGG-CGC- -5'
29393 5' -62.8 NC_006151.1 + 102269 0.66 0.614868
Target:  5'- cCUGGGCgcgcugCCGGAgCGcGGCCcGGCCGgGg -3'
miRNA:   3'- cGACCUG------GGCCUgGC-CCGG-UUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 57384 0.66 0.614868
Target:  5'- gGCgUGG-Ca-GGACCaGGCCAggGCCGCGu -3'
miRNA:   3'- -CG-ACCuGggCCUGGcCCGGU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 54605 0.66 0.614868
Target:  5'- gGCgUGGuCCCGGugcGCCGGGCgcGCCcCGg -3'
miRNA:   3'- -CG-ACCuGGGCC---UGGCCCGguUGGcGC- -5'
29393 5' -62.8 NC_006151.1 + 52374 0.66 0.614868
Target:  5'- cGCgcccccgGGGCCCgcggGGGCggCGGGCgCcGCCGCGc -3'
miRNA:   3'- -CGa------CCUGGG----CCUG--GCCCG-GuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 124976 0.66 0.614868
Target:  5'- aGCUGGACCUGcagcgcgugcACCuGGgCGACUGCGu -3'
miRNA:   3'- -CGACCUGGGCc---------UGGcCCgGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 90088 0.66 0.605167
Target:  5'- --aGGGCCCccGCCGcGCCGcagGCCGCGg -3'
miRNA:   3'- cgaCCUGGGccUGGCcCGGU---UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 20158 0.66 0.605167
Target:  5'- cGCgUGGACCgcCGGGCCGcGCCcgggUCGCGg -3'
miRNA:   3'- -CG-ACCUGG--GCCUGGCcCGGuu--GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 3897 0.66 0.605167
Target:  5'- cGCUGGGacgacgaggCCGGGCugcuCGGGCCAGa-GCGg -3'
miRNA:   3'- -CGACCUg--------GGCCUG----GCCCGGUUggCGC- -5'
29393 5' -62.8 NC_006151.1 + 133165 0.66 0.605167
Target:  5'- cGC-GGGCgUGGGCCucGGCCAcgcgucccacgGCCGCGc -3'
miRNA:   3'- -CGaCCUGgGCCUGGc-CCGGU-----------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 39640 0.66 0.604198
Target:  5'- cGCcGGGcCCCGGAccCCGGucccgcuGCC-GCCGCGc -3'
miRNA:   3'- -CGaCCU-GGGCCU--GGCC-------CGGuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 119429 0.66 0.603229
Target:  5'- cGCUGcGACgCGGGCacguucgUGGGCCGcggcgacguggacGCCGUGc -3'
miRNA:   3'- -CGAC-CUGgGCCUG-------GCCCGGU-------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 82370 0.66 0.595485
Target:  5'- cGCcGGACgCCGGGCgCGucgaaGGCCAcgagcuCCGCGc -3'
miRNA:   3'- -CGaCCUG-GGCCUG-GC-----CCGGUu-----GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 20767 0.66 0.595485
Target:  5'- cGCggcGGACgCGcGCCGGGCgAGCgGCu -3'
miRNA:   3'- -CGa--CCUGgGCcUGGCCCGgUUGgCGc -5'
29393 5' -62.8 NC_006151.1 + 79598 0.66 0.595485
Target:  5'- --gGGAgCCGGAgcCCGGcGCCAcaacccggagcGCCGCc -3'
miRNA:   3'- cgaCCUgGGCCU--GGCC-CGGU-----------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 51131 0.66 0.595485
Target:  5'- cGCgcagGGcguCCCGGAgcacgUCGGGCCggUaCGCGg -3'
miRNA:   3'- -CGa---CCu--GGGCCU-----GGCCCGGuuG-GCGC- -5'
29393 5' -62.8 NC_006151.1 + 106280 0.66 0.595485
Target:  5'- cGCgUGGACCUGG-CCGGG-CAGCaCGa- -3'
miRNA:   3'- -CG-ACCUGGGCCuGGCCCgGUUG-GCgc -5'
29393 5' -62.8 NC_006151.1 + 92547 0.66 0.595485
Target:  5'- -gUGGACUCGGugCagcagguGGCCGagucgcuggaggGCCGCGa -3'
miRNA:   3'- cgACCUGGGCCugGc------CCGGU------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 133457 0.67 0.585826
Target:  5'- cUUGGcCCCGG-UCGaGGCCcgcgaggcGGCCGCGg -3'
miRNA:   3'- cGACCuGGGCCuGGC-CCGG--------UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 122647 0.67 0.585826
Target:  5'- cCUGGAcgaCCUGGAgCGGcGCgAgcGCCGCGc -3'
miRNA:   3'- cGACCU---GGGCCUgGCC-CGgU--UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.