miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 5927 0.71 0.343411
Target:  5'- gGCcgGGGCCCGGAgCCGGcCCGggACCGgGg -3'
miRNA:   3'- -CGa-CCUGGGCCU-GGCCcGGU--UGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 6103 0.75 0.2043
Target:  5'- uGCUGGGCCgaaggaGGACgGGGCggccucguggcucCGGCCGCGg -3'
miRNA:   3'- -CGACCUGGg-----CCUGgCCCG-------------GUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 8177 0.71 0.329041
Target:  5'- -aUGGACCuCGGGCCGGGaCC--CCGgGg -3'
miRNA:   3'- cgACCUGG-GCCUGGCCC-GGuuGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 8223 0.71 0.334019
Target:  5'- gGCcGGGuCCCcuucccggcggggaGGGCCGGGCCGGCgCGCc -3'
miRNA:   3'- -CGaCCU-GGG--------------CCUGGCCCGGUUG-GCGc -5'
29393 5' -62.8 NC_006151.1 + 10911 0.71 0.343411
Target:  5'- cGC-GGACCgGGGUCGGGCCcACgGCGc -3'
miRNA:   3'- -CGaCCUGGgCCUGGCCCGGuUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 11052 0.71 0.365802
Target:  5'- gGCccGGCCUGGACgCGGGCCAcACUGUGc -3'
miRNA:   3'- -CGacCUGGGCCUG-GCCCGGU-UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 11214 0.67 0.528702
Target:  5'- cGCguccgGGAaggcuucuCCCGGGCCgcgaGGGCCGcgGCgGCGa -3'
miRNA:   3'- -CGa----CCU--------GGGCCUGG----CCCGGU--UGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 13154 0.67 0.576198
Target:  5'- uGC-GGuCCCGGAaauuuCCGGGaCGgucGCCGCGg -3'
miRNA:   3'- -CGaCCuGGGCCU-----GGCCCgGU---UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 13451 0.72 0.288624
Target:  5'- gGCcGGuCCCGGACgcccgucccgCGGGCCgGACCGCc -3'
miRNA:   3'- -CGaCCuGGGCCUG----------GCCCGG-UUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 13732 0.72 0.288624
Target:  5'- gGCcGGuCCCGGACgcccgucccgCGGGCCgGACCGCc -3'
miRNA:   3'- -CGaCCuGGGCCUG----------GCCCGG-UUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 14250 0.66 0.644015
Target:  5'- uGCgggGGAuccCCCGGuCgGGGUgGGCCGgGa -3'
miRNA:   3'- -CGa--CCU---GGGCCuGgCCCGgUUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 14841 0.73 0.246525
Target:  5'- -aUGGACCgGGuCUGGGCCGACUGg- -3'
miRNA:   3'- cgACCUGGgCCuGGCCCGGUUGGCgc -5'
29393 5' -62.8 NC_006151.1 + 17056 0.67 0.576198
Target:  5'- gGCgucGGcguccgucaGCCCGGgccgccGCCGGGUCAGgCGCGc -3'
miRNA:   3'- -CGa--CC---------UGGGCC------UGGCCCGGUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 18769 0.79 0.102818
Target:  5'- uGCccgGGGCCCGGGCCGGGgCCGucagcuccuugaugACCGUGa -3'
miRNA:   3'- -CGa--CCUGGGCCUGGCCC-GGU--------------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 19282 0.72 0.308327
Target:  5'- cGCgGGGCCC--ACCgGGGCCAGCgGCGc -3'
miRNA:   3'- -CGaCCUGGGccUGG-CCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 19866 0.67 0.54755
Target:  5'- gGCUcgGGGCCuCGGuggagagcGCCaGGGCCAGCaGCGc -3'
miRNA:   3'- -CGA--CCUGG-GCC--------UGG-CCCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 20102 0.68 0.491774
Target:  5'- gGCUGGGggacgggcgcCCCGGcgACgGGGCUGgggggcgggcGCCGCGg -3'
miRNA:   3'- -CGACCU----------GGGCC--UGgCCCGGU----------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 20158 0.66 0.605167
Target:  5'- cGCgUGGACCgcCGGGCCGcGCCcgggUCGCGg -3'
miRNA:   3'- -CG-ACCUGG--GCCUGGCcCGGuu--GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 20380 0.66 0.644015
Target:  5'- cGCguccagGGuCCCGGGCaccgGGGUCAucGCCGUc -3'
miRNA:   3'- -CGa-----CCuGGGCCUGg---CCCGGU--UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 20691 0.67 0.538098
Target:  5'- cGC-GGACCCGcagcacguacGACCccgcguccggcgGGGCCGGgCGCGa -3'
miRNA:   3'- -CGaCCUGGGC----------CUGG------------CCCGGUUgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.