miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 131945 0.69 0.456083
Target:  5'- aGCUGG-CCaCGGGCgaGGGCgGGCgGCa -3'
miRNA:   3'- -CGACCuGG-GCCUGg-CCCGgUUGgCGc -5'
29393 5' -62.8 NC_006151.1 + 131742 0.69 0.464878
Target:  5'- gGC-GGGCCCGGGCgaggcgaccguCGcGGUCGcgACCGCGg -3'
miRNA:   3'- -CGaCCUGGGCCUG-----------GC-CCGGU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 131592 0.67 0.566605
Target:  5'- cGCUGcGgcaaauGCCCccccuCCGGGCCGGcCCGCGg -3'
miRNA:   3'- -CGAC-C------UGGGccu--GGCCCGGUU-GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 131106 0.74 0.214605
Target:  5'- gGCgggGGGCCCGG-CCGcGGCgCGggagGCCGCGg -3'
miRNA:   3'- -CGa--CCUGGGCCuGGC-CCG-GU----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 130704 0.67 0.537156
Target:  5'- --gGGGCCCGacggggcGGCCcggGGGCCcgcgcGGCCGCGg -3'
miRNA:   3'- cgaCCUGGGC-------CUGG---CCCGG-----UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 130274 0.66 0.644015
Target:  5'- cGC-GGcCCCGaGGCCGcgggcgcgcgccGGCCGACgGCGc -3'
miRNA:   3'- -CGaCCuGGGC-CUGGC------------CCGGUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 129539 0.71 0.33617
Target:  5'- --gGGGCCCgGGGCCGccGUCAACCGCa -3'
miRNA:   3'- cgaCCUGGG-CCUGGCc-CGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 127372 0.67 0.54755
Target:  5'- gGCggGGACCgCGGggguggcggggGCCGcGGCCGAgucgacgggagcCCGCGg -3'
miRNA:   3'- -CGa-CCUGG-GCC-----------UGGC-CCGGUU------------GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 126387 0.76 0.173415
Target:  5'- aGC-GGGCCCGcGCUGcuGGCCAGCCGCGu -3'
miRNA:   3'- -CGaCCUGGGCcUGGC--CCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 126301 0.66 0.634299
Target:  5'- aGCUGGACCaGGcCCGGGaCAugauCCGg- -3'
miRNA:   3'- -CGACCUGGgCCuGGCCCgGUu---GGCgc -5'
29393 5' -62.8 NC_006151.1 + 126154 0.71 0.343411
Target:  5'- uGCUGGugCUGG-CCGGcCUggUCGCGg -3'
miRNA:   3'- -CGACCugGGCCuGGCCcGGuuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 124976 0.66 0.614868
Target:  5'- aGCUGGACCUGcagcgcgugcACCuGGgCGACUGCGu -3'
miRNA:   3'- -CGACCUGGGCc---------UGGcCCgGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 124060 0.67 0.557055
Target:  5'- cCUGGACgCgCGGAC--GGCCGugCGCGc -3'
miRNA:   3'- cGACCUG-G-GCCUGgcCCGGUugGCGC- -5'
29393 5' -62.8 NC_006151.1 + 122876 1.1 0.000685
Target:  5'- uGCUGGACCCGGACCGGGCCAACCGCGa -3'
miRNA:   3'- -CGACCUGGGCCUGGCCCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 122647 0.67 0.585826
Target:  5'- cCUGGAcgaCCUGGAgCGGcGCgAgcGCCGCGc -3'
miRNA:   3'- cGACCU---GGGCCUgGCC-CGgU--UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 122330 0.67 0.546603
Target:  5'- cGCgUGGACCCcgaGGA-CGuGGCCAagaaccuGCCGCa -3'
miRNA:   3'- -CG-ACCUGGG---CCUgGC-CCGGU-------UGGCGc -5'
29393 5' -62.8 NC_006151.1 + 121890 0.69 0.464878
Target:  5'- cGCUGcGCCUGGcgcucgcguacGCgCGGGCCGagggggACCGCGu -3'
miRNA:   3'- -CGACcUGGGCC-----------UG-GCCCGGU------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 121273 0.73 0.268713
Target:  5'- cGCUGGcggagaucaaCGGGCgCGuGGCCGACCGCGa -3'
miRNA:   3'- -CGACCugg-------GCCUG-GC-CCGGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 120971 0.69 0.438768
Target:  5'- gGCggGGAaCUGGAgCGGGCuCAACgGCGg -3'
miRNA:   3'- -CGa-CCUgGGCCUgGCCCG-GUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 120913 0.69 0.427717
Target:  5'- uGCUGGGCCUGGGCgucagcaaguaccaCGgcauGGCCGgcaacaACCGCGu -3'
miRNA:   3'- -CGACCUGGGCCUG--------------GC----CCGGU------UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.