miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29393 5' -62.8 NC_006151.1 + 142098 0.7 0.381279
Target:  5'- cGCaGGACCugcgCGGGCUGGGUgAagcccACCGCGa -3'
miRNA:   3'- -CGaCCUGG----GCCUGGCCCGgU-----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 141973 0.67 0.54755
Target:  5'- uGCgGGAUCCGG-UCGGGCgGcCCGgGa -3'
miRNA:   3'- -CGaCCUGGGCCuGGCCCGgUuGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 141874 0.66 0.638186
Target:  5'- uCUGGugCCGGaggGCCGGGCaucgagcuccaccucCAcgcgccCCGCGg -3'
miRNA:   3'- cGACCugGGCC---UGGCCCG---------------GUu-----GGCGC- -5'
29393 5' -62.8 NC_006151.1 + 141611 0.68 0.482727
Target:  5'- gGCgaGGcuGCCgGGAUCGGGCgGgucgcuGCCGCGg -3'
miRNA:   3'- -CGa-CC--UGGgCCUGGCCCGgU------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 140189 0.75 0.20478
Target:  5'- cGCUGGACCCc-AUCGuGGCC-ACCGCGg -3'
miRNA:   3'- -CGACCUGGGccUGGC-CCGGuUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 139605 0.66 0.644015
Target:  5'- aGCgGcGGCCCGu-CCGGGCgCGGCUGgGg -3'
miRNA:   3'- -CGaC-CUGGGCcuGGCCCG-GUUGGCgC- -5'
29393 5' -62.8 NC_006151.1 + 138702 0.68 0.490866
Target:  5'- cGCUGaGCCCGGcgcugcgcgccgcGCgCGGGUCGuguacgcgcGCCGCGa -3'
miRNA:   3'- -CGACcUGGGCC-------------UG-GCCCGGU---------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 137075 0.67 0.528702
Target:  5'- aGCUGGcGCaCCGGcGCCaGGCCu-UCGCGg -3'
miRNA:   3'- -CGACC-UG-GGCC-UGGcCCGGuuGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 137015 0.69 0.442201
Target:  5'- cGCUGGGCgcccugcucggccugCCGGAcgcgugccccCCGGcGCCGguguACCGCGu -3'
miRNA:   3'- -CGACCUG---------------GGCCU----------GGCC-CGGU----UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 136970 0.69 0.463995
Target:  5'- uGCUGGAgCUGGccgccgcGCCGGGCggCGGgCGCGc -3'
miRNA:   3'- -CGACCUgGGCC-------UGGCCCG--GUUgGCGC- -5'
29393 5' -62.8 NC_006151.1 + 135780 0.69 0.456083
Target:  5'- gGCUGGACgaGGccuucucacuGCCGGGCgAGCgCGCc -3'
miRNA:   3'- -CGACCUGggCC----------UGGCCCGgUUG-GCGc -5'
29393 5' -62.8 NC_006151.1 + 135161 0.73 0.258008
Target:  5'- gGCgGGcgcgGCCCGGACgGGcGCCGGCUGCc -3'
miRNA:   3'- -CGaCC----UGGGCCUGgCC-CGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 135087 0.71 0.33617
Target:  5'- gGCggGGGCggCgGGGCCGGGCgGGCgGCGg -3'
miRNA:   3'- -CGa-CCUG--GgCCUGGCCCGgUUGgCGC- -5'
29393 5' -62.8 NC_006151.1 + 134816 0.78 0.129521
Target:  5'- cGCcGGACCCGGACgGuGG-CGACCGCGc -3'
miRNA:   3'- -CGaCCUGGGCCUGgC-CCgGUUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 134765 0.73 0.258008
Target:  5'- cGCgGGGCCCGcGGCuucggcuccaCGGGCCugugaGGCCGCGg -3'
miRNA:   3'- -CGaCCUGGGC-CUG----------GCCCGG-----UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 134594 0.69 0.421834
Target:  5'- cGCgcacccgGuGACCCuGGAgUCGGGCCAGCgCGUGg -3'
miRNA:   3'- -CGa------C-CUGGG-CCU-GGCCCGGUUG-GCGC- -5'
29393 5' -62.8 NC_006151.1 + 133457 0.67 0.585826
Target:  5'- cUUGGcCCCGG-UCGaGGCCcgcgaggcGGCCGCGg -3'
miRNA:   3'- cGACCuGGGCCuGGC-CCGG--------UUGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 133165 0.66 0.605167
Target:  5'- cGC-GGGCgUGGGCCucGGCCAcgcgucccacgGCCGCGc -3'
miRNA:   3'- -CGaCCUGgGCCUGGc-CCGGU-----------UGGCGC- -5'
29393 5' -62.8 NC_006151.1 + 132807 0.7 0.4053
Target:  5'- cGCUGGuACagCGcGuCCGGGCUGGCCGCc -3'
miRNA:   3'- -CGACC-UGg-GC-CuGGCCCGGUUGGCGc -5'
29393 5' -62.8 NC_006151.1 + 132642 0.74 0.219668
Target:  5'- --cGGcGCCCGGACCuGGGCCGccaccucguCCGCGg -3'
miRNA:   3'- cgaCC-UGGGCCUGG-CCCGGUu--------GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.